add an option alias -O for the old obi format

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coissac committed 2022-02-24 07:26:55 +01:00
1 parent f5b278f5ec
commit f18cc034bb
5 files changed
+44 -93

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@@ -29,7 +29,6 @@ func PairingOptionSet(options *getoptions.GetOpt) {
options.Alias("D"),
options.Description("Length added to the fast detected overlap for the precise alignement"))
options.IntVar(&_MinOverlap, "min-overlap", _MinOverlap,
options.Alias("O"),
options.Description("Minimum ovelap between both the reads to consider the aligment"))
options.Float64Var(&_MinIdentity, "min-identity", _MinIdentity,
options.Alias("X"),