mirror of
https://github.com/metabarcoding/obitools4.git
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First commit
This commit is contained in:
5
pkg/obiformats/kseq/Makefile
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5
pkg/obiformats/kseq/Makefile
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@@ -0,0 +1,5 @@
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all:kseq.h kseq_test.c
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$(CC) -g -O2 kseq_test.c -o kseq_test -lz
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clean:
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rm -f *.o kseq_test
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223
pkg/obiformats/kseq/kseq.h
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223
pkg/obiformats/kseq/kseq.h
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@@ -0,0 +1,223 @@
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/* The MIT License
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Copyright (c) 2008 Genome Research Ltd (GRL).
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Permission is hereby granted, free of charge, to any person obtaining
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a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
|
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
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BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
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ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
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CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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*/
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/* Contact: Heng Li <lh3@sanger.ac.uk> */
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/* Last Modified: 12APR2009 */
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#ifndef AC_KSEQ_H
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#define AC_KSEQ_H
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#include <ctype.h>
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#include <string.h>
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#include <stdlib.h>
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#define KS_SEP_SPACE 0 // isspace(): \t, \n, \v, \f, \r
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#define KS_SEP_TAB 1 // isspace() && !' '
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#define KS_SEP_MAX 1
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#define __KS_TYPE(type_t) \
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typedef struct __kstream_t { \
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char *buf; \
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int begin, end, is_eof; \
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type_t f; \
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} kstream_t;
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#define ks_eof(ks) ((ks)->is_eof && (ks)->begin >= (ks)->end)
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#define ks_rewind(ks) ((ks)->is_eof = (ks)->begin = (ks)->end = 0)
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#define __KS_BASIC(type_t, __bufsize) \
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static inline kstream_t *ks_init(type_t f) \
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{ \
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kstream_t *ks = (kstream_t*)calloc(1, sizeof(kstream_t)); \
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ks->f = f; \
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ks->buf = (char*)malloc(__bufsize); \
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return ks; \
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} \
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static inline void ks_destroy(kstream_t *ks) \
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{ \
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if (ks) { \
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free(ks->buf); \
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free(ks); \
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} \
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}
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#define __KS_GETC(__read, __bufsize) \
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static inline int ks_getc(kstream_t *ks) \
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{ \
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if (ks->is_eof && ks->begin >= ks->end) return -1; \
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if (ks->begin >= ks->end) { \
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ks->begin = 0; \
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ks->end = __read(ks->f, ks->buf, __bufsize); \
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if (ks->end < __bufsize) ks->is_eof = 1; \
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if (ks->end == 0) return -1; \
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} \
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return (int)ks->buf[ks->begin++]; \
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}
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#ifndef KSTRING_T
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#define KSTRING_T kstring_t
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typedef struct __kstring_t {
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size_t l, m;
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char *s;
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} kstring_t;
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#endif
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#ifndef kroundup32
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#define kroundup32(x) (--(x), (x)|=(x)>>1, (x)|=(x)>>2, (x)|=(x)>>4, (x)|=(x)>>8, (x)|=(x)>>16, ++(x))
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#endif
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#define __KS_GETUNTIL(__read, __bufsize) \
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static int ks_getuntil(kstream_t *ks, int delimiter, kstring_t *str, int *dret) \
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{ \
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if (dret) *dret = 0; \
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str->l = 0; \
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if (ks->begin >= ks->end && ks->is_eof) return -1; \
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for (;;) { \
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int i; \
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if (ks->begin >= ks->end) { \
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if (!ks->is_eof) { \
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ks->begin = 0; \
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ks->end = __read(ks->f, ks->buf, __bufsize); \
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if (ks->end < __bufsize) ks->is_eof = 1; \
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if (ks->end == 0) break; \
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} else break; \
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} \
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if (delimiter > KS_SEP_MAX) { \
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for (i = ks->begin; i < ks->end; ++i) \
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if (ks->buf[i] == delimiter) break; \
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} else if (delimiter == KS_SEP_SPACE) { \
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for (i = ks->begin; i < ks->end; ++i) \
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if (isspace(ks->buf[i])) break; \
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} else if (delimiter == KS_SEP_TAB) { \
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for (i = ks->begin; i < ks->end; ++i) \
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if (isspace(ks->buf[i]) && ks->buf[i] != ' ') break; \
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} else i = 0; /* never come to here! */ \
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if (str->m - str->l < i - ks->begin + 1) { \
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str->m = str->l + (i - ks->begin) + 1; \
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kroundup32(str->m); \
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str->s = (char*)realloc(str->s, str->m); \
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} \
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memcpy(str->s + str->l, ks->buf + ks->begin, i - ks->begin); \
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str->l = str->l + (i - ks->begin); \
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ks->begin = i + 1; \
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if (i < ks->end) { \
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if (dret) *dret = ks->buf[i]; \
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break; \
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} \
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} \
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if (str->l == 0) { \
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str->m = 1; \
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str->s = (char*)calloc(1, 1); \
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} \
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str->s[str->l] = '\0'; \
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return str->l; \
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}
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#define KSTREAM_INIT(type_t, __read, __bufsize) \
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__KS_TYPE(type_t) \
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__KS_BASIC(type_t, __bufsize) \
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__KS_GETC(__read, __bufsize) \
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__KS_GETUNTIL(__read, __bufsize)
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#define __KSEQ_BASIC(type_t) \
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static inline kseq_t *kseq_init(type_t fd) \
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{ \
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kseq_t *s = (kseq_t*)calloc(1, sizeof(kseq_t)); \
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s->f = ks_init(fd); \
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return s; \
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} \
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static inline void kseq_rewind(kseq_t *ks) \
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{ \
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ks->last_char = 0; \
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ks->f->is_eof = ks->f->begin = ks->f->end = 0; \
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} \
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static inline void kseq_destroy(kseq_t *ks) \
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{ \
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if (!ks) return; \
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free(ks->name.s); free(ks->comment.s); free(ks->seq.s); free(ks->qual.s); \
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ks_destroy(ks->f); \
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free(ks); \
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}
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/* Return value:
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>=0 length of the sequence (normal)
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-1 end-of-file
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-2 truncated quality string
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*/
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#define __KSEQ_READ \
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static int kseq_read(kseq_t *seq) \
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{ \
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int c; \
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kstream_t *ks = seq->f; \
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if (seq->last_char == 0) { /* then jump to the next header line */ \
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while ((c = ks_getc(ks)) != -1 && c != '>' && c != '@'); \
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if (c == -1) return -1; /* end of file */ \
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seq->last_char = c; \
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} /* the first header char has been read */ \
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seq->comment.l = seq->seq.l = seq->qual.l = 0; \
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if (ks_getuntil(ks, 0, &seq->name, &c) < 0) return -1; \
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if (c != '\n') ks_getuntil(ks, '\n', &seq->comment, 0); \
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while ((c = ks_getc(ks)) != -1 && c != '>' && c != '+' && c != '@') { \
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if (isgraph(c)) { /* printable non-space character */ \
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if (seq->seq.l + 1 >= seq->seq.m) { /* double the memory */ \
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seq->seq.m = seq->seq.l + 2; \
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kroundup32(seq->seq.m); /* rounded to next closest 2^k */ \
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seq->seq.s = (char*)realloc(seq->seq.s, seq->seq.m); \
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} \
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seq->seq.s[seq->seq.l++] = (char)c; \
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} \
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} \
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if (c == '>' || c == '@') seq->last_char = c; /* the first header char has been read */ \
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seq->seq.s[seq->seq.l] = 0; /* null terminated string */ \
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if (c != '+') return seq->seq.l; /* FASTA */ \
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if (seq->qual.m < seq->seq.m) { /* allocate enough memory */ \
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seq->qual.m = seq->seq.m; \
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seq->qual.s = (char*)realloc(seq->qual.s, seq->qual.m); \
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} \
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while ((c = ks_getc(ks)) != -1 && c != '\n'); /* skip the rest of '+' line */ \
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if (c == -1) return -2; /* we should not stop here */ \
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while ((c = ks_getc(ks)) != -1 && seq->qual.l < seq->seq.l) \
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if (c >= 33 && c <= 127) seq->qual.s[seq->qual.l++] = (unsigned char)c; \
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seq->qual.s[seq->qual.l] = 0; /* null terminated string */ \
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seq->last_char = 0; /* we have not come to the next header line */ \
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if (seq->seq.l != seq->qual.l) return -2; /* qual string is shorter than seq string */ \
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return seq->seq.l; \
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}
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#define __KSEQ_TYPE(type_t) \
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typedef struct { \
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kstring_t name, comment, seq, qual; \
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int last_char; \
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kstream_t *f; \
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} kseq_t;
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#define KSEQ_INIT(type_t, __read) \
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KSTREAM_INIT(type_t, __read, 4096) \
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__KSEQ_TYPE(type_t) \
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__KSEQ_BASIC(type_t) \
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__KSEQ_READ
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#endif
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BIN
pkg/obiformats/kseq/kseq_test
Executable file
BIN
pkg/obiformats/kseq/kseq_test
Executable file
Binary file not shown.
27
pkg/obiformats/kseq/kseq_test.c
Normal file
27
pkg/obiformats/kseq/kseq_test.c
Normal file
@@ -0,0 +1,27 @@
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#include <zlib.h>
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#include <stdio.h>
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#include "kseq.h"
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KSEQ_INIT(gzFile, gzread)
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int main(int argc, char *argv[])
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{
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gzFile fp;
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kseq_t *seq;
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int l;
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if (argc == 1) {
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fprintf(stderr, "Usage: %s <in.seq>\n", argv[0]);
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return 1;
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}
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fp = gzopen(argv[1], "r");
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seq = kseq_init(fp);
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while ((l = kseq_read(seq)) >= 0) {
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printf("name: %s\n", seq->name.s);
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if (seq->comment.l) printf("comment: %s\n", seq->comment.s);
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printf("seq: %s\n", seq->seq.s);
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if (seq->qual.l) printf("qual: %s\n", seq->qual.s);
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}
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printf("return value: %d\n", l);
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kseq_destroy(seq);
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gzclose(fp);
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return 0;
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}
|
||||
20
pkg/obiformats/kseq/kseq_test.dSYM/Contents/Info.plist
Normal file
20
pkg/obiformats/kseq/kseq_test.dSYM/Contents/Info.plist
Normal file
@@ -0,0 +1,20 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE plist PUBLIC "-//Apple Computer//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
|
||||
<plist version="1.0">
|
||||
<dict>
|
||||
<key>CFBundleDevelopmentRegion</key>
|
||||
<string>English</string>
|
||||
<key>CFBundleIdentifier</key>
|
||||
<string>com.apple.xcode.dsym.kseq_test</string>
|
||||
<key>CFBundleInfoDictionaryVersion</key>
|
||||
<string>6.0</string>
|
||||
<key>CFBundlePackageType</key>
|
||||
<string>dSYM</string>
|
||||
<key>CFBundleSignature</key>
|
||||
<string>????</string>
|
||||
<key>CFBundleShortVersionString</key>
|
||||
<string>1.0</string>
|
||||
<key>CFBundleVersion</key>
|
||||
<string>1</string>
|
||||
</dict>
|
||||
</plist>
|
||||
Binary file not shown.
291
pkg/obiformats/kseq/s1.fasta
Normal file
291
pkg/obiformats/kseq/s1.fasta
Normal file
@@ -0,0 +1,291 @@
|
||||
>HWI-D00393:103:C6KCUANXX:2:2309:18209:70743_CONS_SUB_SUB reverse_score=72.0; count=2; direction=forward; experiment=australie; seq_a_mismatch=0; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; status=full; seq_a_deletion=0; seq_length=98; start=aaaac; merged_sample={'AN5-30_b': 1, 'AML-33_b': 1}; seq_a_insertion=0; mode=alignment; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
aaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagagtt
|
||||
ggcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2209:18639:37342_CONS_SUB_SUB_CMP ali_length=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-45_b': 1, 'AN2-30_a': 1}; forward_score=72.0; seq_b_mismatch=0; start=ataaa; experiment=australie; seq_a_single=33; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=2; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ataaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2115:3400:66119_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-03_a': 1}; forward_score=72.0; score=367.38470594; seq_a_mismatch=0; forward_tag=gtacgact; seq_b_mismatch=0; start=ccaaa; experiment=australie; mid_quality=62.0797101449; avg_quality=58.9050632911; seq_a_single=33; score_norm=3.99331202109; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=gtgtacat; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=03_03A; seq_b_single=33;
|
||||
ccaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2310:20070:75862_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=23.1; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-12_b': 1}; forward_score=72.0; score=360.189837214; seq_a_mismatch=0; forward_tag=catcagtc; seq_b_mismatch=0; start=ccaaa; experiment=australie; mid_quality=53.0507246377; avg_quality=49.6265822785; seq_a_single=33; score_norm=3.91510692624; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=cgagtcgt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=28.9; position=11_11D; seq_b_single=33;
|
||||
ccaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggaataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2114:5633:21903_CONS_SUB_SUB merged_sample={'ABR-15_a': 1, 'AN5-12_b': 1, 'AW2-35_b': 1}; forward_score=72.0; seq_b_insertion=0; seq_a_insertion=0; seq_b_deletion=0; seq_b_mismatch=0; seq_a_deletion=0; count=3; seq_length=100; start=ccaaa; experiment=australie; reverse_score=72.0; mode=alignment; status=full; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ccaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1112:5602:81492_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-12_b': 1}; forward_score=72.0; score=367.699098517; seq_a_mismatch=0; forward_tag=catcagtc; seq_b_mismatch=0; start=ccaaa; experiment=australie; mid_quality=62.2463768116; avg_quality=59.0506329114; seq_a_single=33; score_norm=3.9967293317; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=cgagtcgt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_11D; seq_b_single=33;
|
||||
ccaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtcttgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1101:4074:21538_CONS_SUB_SUB merged_sample={'AN4-36_b': 51, 'AW2-04_b': 11, 'AW2-04_a': 10, 'AN4-38_b': 158, 'AN5-43_b': 2, 'ADR-14_b': 2, 'AW2-34_b': 10, 'AW2-34_a': 1, 'AN3-38_b': 1, 'ABR-30_b': 1, 'AW2-36_b': 17, 'AN2-15_a': 11, 'AN4-34_b': 44, 'AN5-45_b': 5, 'AW2-27_b': 1, 'AW2-27_a': 3, 'ADR-25_a': 1, 'AN4-19_b': 30, 'ABR-44_a': 2, 'ABR-31_b': 1, 'AN2-20_b': 1, 'AN1-43_a': 2, 'AN2-13_b': 21, 'AN5-11_b': 2, 'AN4-22_b': 16, 'AN3-14_b': 1, 'AN3-14_a': 3, 'AW2-35_b': 101, 'AN2-19_b': 1, 'ABR-33_a': 1, 'ABR-29_a': 11, 'AW1-40_b': 9, 'ADR-13_a': 5, 'ADR-06_b': 1, 'AN4-26_a': 1, 'AN5-15_b': 20, 'AN2-01_a': 5, 'ADR-21_b': 1, 'AW2-23_b': 29, 'AW2-23_a': 3, 'ADR-13_b': 1, 'AW2-21_a': 1, 'AWO-27_b': 1, 'AW2-21_b': 20, 'AN2-10_a': 9, 'AN5-13_b': 19, 'AN4-20_b': 1, 'AN2-30_a': 1, 'AN3-22_b': 4, 'AN3-25_b': 3, 'AN3-25_a': 5, 'AN4-24_b': 26, 'ABR-15_a': 34, 'AW2-36_a': 5, 'AW2-12_b': 7, 'AW2-12_a': 5, 'AN5-48_a': 1, 'AW1-06_a': 6, 'AN5-21_a': 1, 'AN5-21_b': 20, 'AN2-09_b': 11, 'ABR-13_b': 2, 'ABR-13_a': 23, 'AN2-09_a': 7, 'AN3-20_b': 2, 'AN2-07_a': 4, 'AN2-07_b': 8, 'AN4-44_b': 26, 'AN4-21_b': 19, 'AW2-03_a': 28, 'AN4-42_b': 30, 'AW2-03_b': 47, 'ADR-26_b': 1, 'AN1-03_a': 6, 'AML-47_a': 1, 'AWO-30_b': 1, 'AN1-03_b': 3, 'ADR-30_b': 1, 'AN4-37_b': 40, 'AW2-07_b': 43, 'AN4-40_a': 1, 'AN3-44_b': 1, 'AN4-40_b': 36, 'AW2-01_b': 32, 'AW2-01_a': 13, 'AN5-10_b': 64, 'AW1-11_a': 29, 'AN2-43_a': 1, 'AN2-43_b': 2, 'AN1-17_a': 6, 'AN5-37_b': 1, 'blk-12_b': 1, 'ABR-35_b': 1, 'blk-02_b': 1, 'AN2-45_b': 8, 'AN3-40_a': 1, 'AW1-17_a': 5, 'AN2-45_a': 7, 'AW2-17_b': 4, 'ABR-25_a': 1, 'ABR-08_b': 1, 'AN5-14_b': 6, 'AWO-10_b': 1, 'AN2-38_a': 3, 'AN5-33_b': 15, 'AN2-12_a': 7, 'blk-04_b': 1, 'AN3-08_b': 4, 'AN3-01_b': 2, 'AN5-12_b': 106, 'ABR-23_a': 2, 'AN3-42_b': 19, 'AN4-23_b': 96, 'AN2-35_b': 1, 'ABR-02_a': 7, 'AN5-35_a': 1, 'ABR-17_a': 5, 'AML-42_a': 1, 'ADR-10_b': 1, 'ABR-39_a': 14, 'AN3-20_a': 3, 'pos-01_a': 1, 'AN5-03_b': 13, 'AN3-05_a': 1, 'AWO-42_b': 1, 'ABR-14_b': 1, 'AW2-13_b': 2, 'AW2-13_a': 5, 'blk-06_b': 2, 'AML-24_a': 1, 'ADR-12_b': 1, 'ABR-09_a': 3, 'ABR-12_b': 1, 'AN3-03_b': 3, 'AN3-03_a': 4, 'ABR-12_a': 34, 'ABR-27_b': 1, 'AN4-11_b': 15, 'AN5-22_b': 11, 'AN3-47_b': 2, 'AN3-47_a': 1, 'AN4-13_b': 35, 'AN2-41_b': 1, 'AN4-41_b': 14, 'AN4-22_a': 1, 'AN2-02_b': 5, 'ADR-37_b': 1, 'AN4-15_b': 2, 'AN5-20_a': 1, 'AN5-20_b': 18, 'AN3-45_b': 4, 'AW2-40_b': 20, 'AN5-09_b': 2, 'AN5-09_a': 1, 'AW2-40_a': 5, 'AN4-47_b': 11, 'AWO-19_b': 1, 'ABR-41_a': 12, 'AW1-32_b': 1, 'AW1-30_a': 15, 'AN4-05_a': 1, 'AN3-41_a': 1, 'AN3-46_b': 2, 'AN5-24_b': 35, 'ABR-43_a': 1, 'AW1-34_b': 1, 'AN5-30_b': 20, 'AN5-30_a': 1, 'AW2-28_a': 10, 'AW2-28_b': 5, 'AN5-25_b': 16, 'AN4-01_a': 1, 'AN2-04_b': 2, 'AW2-30_a': 22, 'AML-19_a': 1, 'AN2-34_a': 2, 'AN2-38_b': 3, 'pos-06_a': 1, 'AN5-19_b': 4, 'blk-07_b': 1, 'ABR-47_a': 1, 'AN2-02_a': 7, 'AN3-43_b': 12, 'AW1-20_a': 2, 'AW2-39_a': 3, 'AW2-43_a': 1, 'AWO-41_a': 10, 'AN5-38_a': 1, 'AW2-43_b': 3, 'AN4-17_b': 12, 'AW2-07_a': 48, 'AN3-04_b': 2, 'AN4-35_b': 86, 'AW1-26_a': 8, 'AWO-34_b': 1, 'ABR-14_a': 13, 'AN2-13_a': 4, 'AN4-39_a': 1, 'ABR-01_a': 78, 'AN5-44_b': 1, 'AN4-39_b': 85, 'AW1-30_b': 4, 'AN2-31_b': 7, 'AN3-37_a': 1, 'AN4-12_b': 142, 'AN3-35_b': 12, 'ABR-42_a': 9, 'ABR-03_b': 1, 'AN3-17_b': 19, 'AML-08_a': 2, 'AW1-29_a': 4, 'AN2-05_b': 3, 'AN4-46_b': 39, 'AN2-05_a': 5, 'AN4-14_b': 4, 'AN5-23_b': 24, 'AN4-25_a': 1, 'AML-12_a': 1, 'AN3-34_a': 1, 'AN5-28_b': 31, 'AN3-34_b': 2, 'AN5-27_b': 3, 'ABR-32_b': 1, 'AWO-15_b': 1, 'ABR-46_a': 8, 'AW1-18_a': 76, 'AN3-13_b': 1, 'AN4-18_b': 2, 'AN4-24_a': 1, 'AWO-06_b': 1, 'AN5-42_b': 14, 'ABR-28_a': 2, 'AN2-40_a': 2, 'AW1-40_a': 9, 'AW2-35_a': 70, 'ABR-40_b': 2, 'AN2-10_b': 3, 'AN3-27_b': 3, 'ABR-44_b': 1, 'ADR-38_b': 1, 'AN3-19_b': 2, 'ABR-40_a': 22, 'AN4-06_b': 17, 'ADR-05_b': 1, 'AN2-12_b': 1, 'ABR-08_a': 6, 'AN5-41_b': 10, 'AWO-37_b': 1, 'AN4-29_b': 40, 'AW2-42_b': 3, 'AW1-27_a': 6, 'ADR-34_b': 1, 'AN4-45_b': 115, 'AWO-13_b': 1, 'AN5-34_b': 73, 'ABR-22_b': 2, 'AN5-39_b': 2, 'AW2-42_a': 1, 'AN2-04_a': 4, 'AN4-43_b': 19, 'AW1-08_b': 1, 'AW1-08_a': 1, 'AW1-11_b': 1, 'AN4-48_a': 1, 'AML-04_a': 1, 'AML-41_a': 1, 'AW1-35_a': 2}; count=3190; seq_b_insertion=0; status=full; seq_a_deletion=0; seq_length=100; start=ctaaa; experiment=australie; seq_a_insertion=0; mode=alignment; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1102:20365:63690_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'ABR-13_a': 1}; forward_score=72.0; score=367.706336455; seq_a_mismatch=0; forward_tag=tagtcgca; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=cgctctcg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=01_09E; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgctcgttga
|
||||
>HWI-D00393:103:C6KCUANXX:2:1109:5898:71477_CONS_SUB_SUB_CMP merged_sample={'AW2-04_a': 1, 'AN4-38_b': 1, 'AW1-07_b': 1, 'AN4-34_b': 5, 'AN4-19_b': 1, 'AN2-20_b': 1, 'AN2-13_b': 3, 'AN5-11_b': 1, 'AN3-14_a': 1, 'ABR-29_a': 1, 'AW2-23_b': 3, 'AW2-23_a': 1, 'AN4-28_b': 1, 'AW2-21_b': 3, 'AN4-24_b': 1, 'AN5-21_b': 1, 'ABR-13_a': 2, 'AN3-20_b': 1, 'ADR-11_b': 1, 'AN4-44_b': 1, 'AN3-46_b': 2, 'AN4-42_b': 1, 'AW2-03_b': 2, 'AN1-03_a': 1, 'AN4-37_b': 2, 'AW2-07_b': 3, 'AN4-40_b': 3, 'AW2-01_a': 1, 'AW1-11_a': 5, 'AN2-43_b': 2, 'pos-09_a': 1, 'ABR-25_a': 1, 'AN2-38_b': 1, 'AN3-08_a': 1, 'AN3-01_b': 1, 'AN5-12_b': 2, 'AN3-42_b': 3, 'AN4-23_b': 1, 'ABR-02_a': 1, 'ABR-17_a': 1, 'ABR-39_a': 1, 'ABR-14_a': 3, 'AW2-13_b': 1, 'ABR-12_a': 4, 'AN4-13_b': 2, 'AN2-41_b': 1, 'AN4-15_b': 1, 'AN5-20_b': 1, 'AW2-40_b': 3, 'ABR-41_a': 1, 'AN3-35_a': 1, 'AN3-43_b': 1, 'AN5-24_b': 2, 'AN5-30_b': 1, 'AN5-34_b': 3, 'AN5-19_b': 1, 'AWO-41_a': 1, 'AN5-38_a': 1, 'AW2-07_a': 1, 'AN4-35_b': 5, 'ABR-01_a': 4, 'AN4-39_b': 2, 'AN2-31_b': 1, 'AW1-30_a': 1, 'AN4-12_b': 2, 'ABR-42_a': 2, 'AN3-17_a': 1, 'AN3-17_b': 1, 'AN2-05_b': 1, 'AN4-46_b': 1, 'AN4-14_b': 4, 'AN5-23_b': 4, 'ABR-32_a': 1, 'ABR-46_a': 2, 'AW1-18_a': 4, 'AN4-18_b': 1, 'AW1-35_a': 1, 'AW2-35_b': 6, 'AW1-40_b': 3, 'AW2-35_a': 2, 'AN2-10_a': 2, 'AN2-02_a': 1, 'AN4-29_b': 1, 'AN4-45_b': 3, 'AW2-44_b': 1, 'ABR-22_b': 1, 'AW1-28_b': 1, 'AW2-42_b': 1, 'AN4-43_b': 2, 'AW1-27_a': 1}; count=159; status=full; seq_a_deletion=0; seq_length=100; start=ctaaa; experiment=australie; seq_a_insertion=0; mode=alignment; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1116:11515:15328_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-44_b': 1, 'AN4-39_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=2; seq_length=100; status=full; mode=alignment; head_quality=37.0; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttactaggttaaggtctcgtttgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1206:17870:33853_CONS_SUB_SUB ali_length=92; seq_ab_match=92; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW1-30_a': 7}; forward_score=72.0; seq_a_mismatch=0; forward_tag=cgctctcg; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=gactgatg; goodAli=Alignement; count=7; seq_length=100; status=full; mode=alignment; position=02_12A; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcttaactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2106:7652:12042_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-40_b': 1, 'AW2-35_b': 1, 'ABR-01_a': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=3; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcgtaactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2115:4325:51738_CONS_SUB_SUB_CMP status=full; merged_sample={'AW1-29_a': 1, 'ABR-41_a': 1, 'AN2-02_a': 1, 'AN4-39_b': 1, 'AN2-07_a': 1}; seq_b_insertion=0; seq_a_insertion=0; seq_a_mismatch=0; forward_score=72.0; tail_quality=37.0; seq_b_deletion=0; seq_b_mismatch=0; seq_a_deletion=0; count=5; seq_length=100; start=ctaaa; experiment=australie; reverse_score=72.0; mode=alignment; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgctaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2211:17027:90962_CONS_SUB_SUB status=full; merged_sample={'AML-46_a': 1, 'AN4-46_b': 7}; seq_b_insertion=0; seq_a_insertion=0; seq_a_mismatch=0; forward_score=72.0; seq_b_deletion=0; seq_b_mismatch=0; seq_a_deletion=0; count=8; seq_length=100; start=ctaaa; experiment=australie; reverse_score=72.0; mode=alignment; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcattcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1113:14380:43631_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-34_b': 1}; forward_score=72.0; score=367.706336455; seq_a_mismatch=0; forward_tag=atgatcgc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_08B; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagtatgtaaaggtctcgatcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1116:10928:36920_CONS_SUB_SUB_CMP ali_length=92; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-38_b': 1, 'AN5-25_b': 1, 'AW2-01_a': 1}; forward_score=72.0; seq_a_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=3; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgtttgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1204:11153:34132_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-38_b': 1, 'AN4-39_b': 1, 'AN2-31_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; status=full; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=3; seq_length=100; mode=alignment; head_quality=37.0; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactattcagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2106:2429:2922_CONS_SUB_SUB_CMP ali_length=93; seq_ab_match=93; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-38_b': 1}; forward_score=72.0; score=371.700731814; seq_a_mismatch=0; forward_tag=tctactga; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.7299270073; avg_quality=59.4522292994; seq_a_single=32; score_norm=3.99678206251; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=99; status=full; mode=alignment; head_quality=37.0; position=11_08F; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggtaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2201:17654:97503_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=34.6; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-34_b': 1}; forward_score=72.0; score=307.231253197; seq_a_mismatch=0; forward_tag=tcagtgtc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=53.8115942029; avg_quality=51.4113924051; seq_a_single=33; score_norm=3.33947014344; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tcagtgtc; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=35.1; position=12_02B; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgtgaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2206:15790:49247_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-24_b': 1, 'AWO-41_a': 1, 'AW2-35_a': 1, 'AN4-35_b': 1, 'AW2-07_a': 1, 'AN3-04_b': 1, 'AN2-13_a': 1, 'AN4-22_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=8; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttagggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2301:12930:40102_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'ABR-15_a': 1, 'AN4-39_b': 1}; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=2; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttaacaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2315:17692:90977_CONS_SUB_SUB_CMP ali_length=93; seq_a_deletion=0; reverse_score=72.0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-38_b': 1, 'ABR-41_a': 1, 'AN3-17_b': 1}; forward_score=72.0; seq_a_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=32; status=full; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; goodAli=Alignement; count=3; seq_length=99; mode=alignment; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactattagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1207:9047:41800_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'ABR-13_a': 2, 'AN5-19_a': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=3; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgctcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2210:14421:16016_CONS_SUB_SUB_CMP reverse_score=66.0; count=7; direction=reverse; seq_b_insertion=0; experiment=australie; seq_a_mismatch=0; seq_b_deletion=0; seq_b_mismatch=0; seq_a_deletion=0; seq_length=99; start=ctaaa; merged_sample={'AW2-12_b': 1, 'AN4-41_b': 1, 'AW2-07_a': 1, 'AN5-21_b': 1, 'AN2-15_a': 1, 'AN4-23_b': 1, 'AN4-37_b': 1}; seq_a_insertion=0; mode=alignment; status=full; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgtta
|
||||
>HWI-D00393:103:C6KCUANXX:2:2211:13367:14752_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=32.6; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW1-18_a': 1}; forward_score=72.0; score=367.610399661; seq_a_mismatch=0; forward_tag=gtcacgtc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=61.0434782609; avg_quality=57.6329113924; seq_a_single=33; score_norm=3.9957652137; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=gtcgtaga; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=35.6; position=02_10C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaagatctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2307:6880:68904_CONS_SUB_SUB_CMP ali_length=81; seq_ab_match=56; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-37_b': 1}; forward_score=72.0; score=59.9384545346; seq_a_mismatch=1; forward_tag=atcagtca; seq_b_mismatch=22; start=ctaaa; experiment=australie; mid_quality=52.6666666667; avg_quality=50.6835443038; seq_a_single=33; score_norm=0.73998092018; reverse_score=72.0; direction=reverse; seq_b_insertion=2; seq_b_deletion=13; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_08E; seq_b_single=44;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaagtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1312:11682:89893_CONS_SUB_SUB_CMP ali_length=92; seq_a_deletion=0; reverse_score=72.0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-19_b': 1, 'AN5-10_b': 1, 'AN5-15_b': 1, 'AW2-34_b': 1, 'AN5-45_b': 1, 'AN4-40_b': 1}; forward_score=72.0; seq_a_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; status=full; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=6; seq_length=100; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcattaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2109:18223:83128_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'ABR-15_a': 1, 'ABR-13_a': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=cgctctcg; goodAli=Alignement; count=2; seq_length=100; status=full; mode=alignment; head_quality=37.0; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttggcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2204:19781:26262_CONS_SUB_SUB_CMP ali_length=95; seq_ab_match=95; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'ABR-01_a': 1}; forward_score=72.0; score=379.691935178; seq_a_mismatch=0; forward_tag=gatcgcga; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=63.5703703704; avg_quality=60.1419354839; seq_a_single=30; score_norm=3.9967572124; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=155; reverse_tag=actagatc; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=01_07H; seq_b_single=30;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaagatctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2215:4598:28592_CONS_SUB_SUB_CMP status=full; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-40_b': 1, 'AW2-35_b': 1, 'AN5-03_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; goodAli=Alignement; count=3; seq_length=100; mode=alignment; head_quality=37.0;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggcctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2304:13327:3228_CONS_SUB_SUB merged_sample={'AN4-36_b': 1, 'AN4-29_b': 1, 'AW2-01_b': 1, 'AW2-35_a': 1, 'ABR-46_a': 1, 'AW1-18_a': 1, 'AW1-40_b': 1, 'AN4-24_b': 1, 'AW2-07_b': 2}; forward_score=72.0; seq_b_insertion=0; seq_a_insertion=0; seq_a_mismatch=0; seq_b_deletion=0; seq_b_mismatch=0; seq_a_deletion=0; count=10; seq_length=100; start=ctaaa; experiment=australie; reverse_score=72.0; mode=alignment; status=full; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtcccgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1208:20375:7918_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; seq_a_deletion=0; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-37_b': 1, 'AW2-30_a': 1, 'AN4-35_b': 1}; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=3; seq_length=100; status=full; mode=alignment; head_quality=37.0; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcatagctatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1215:20045:28654_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-12_b': 1, 'AN5-42_b': 1, 'AN4-23_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=3; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcctaactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1302:19280:14816_CONS_SUB_SUB_CMP status=full; merged_sample={'ABR-01_a': 1, 'AWO-46_b': 1, 'AN4-22_b': 1}; seq_b_insertion=0; seq_a_mismatch=0; forward_score=72.0; seq_b_deletion=0; seq_b_mismatch=0; seq_a_deletion=0; count=3; seq_length=100; start=ctaaa; experiment=australie; seq_a_insertion=0; mode=alignment; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgtacgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2214:8779:29491_CONS_SUB_SUB_CMP status=full; merged_sample={'AN5-24_b': 1, 'ADR-13_a': 2, 'AW2-35_a': 1}; seq_b_insertion=0; seq_a_insertion=0; forward_score=72.0; reverse_match=tttgtctgcttaattgcg; seq_b_mismatch=0; seq_a_deletion=0; count=4; seq_length=100; start=ctaaa; experiment=australie; reverse_score=72.0; mode=alignment; seq_b_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; head_quality=37.0; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggctaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2104:3449:54357_CONS_SUB_SUB_CMP status=full; merged_sample={'AN4-13_b': 1, 'AN4-42_b': 1, 'AN4-38_b': 1, 'AN5-21_b': 1, 'AN4-46_b': 1, 'AN4-12_b': 6}; seq_b_insertion=0; seq_a_mismatch=0; forward_score=72.0; seq_b_deletion=0; seq_b_mismatch=0; seq_a_deletion=0; count=11; seq_length=100; start=ctaaa; experiment=australie; seq_a_insertion=0; mode=alignment; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgttag
|
||||
>HWI-D00393:103:C6KCUANXX:2:1102:14455:71108_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-23_b': 1}; forward_score=72.0; score=367.706336455; seq_a_mismatch=0; forward_tag=actagatc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=ctatgcta; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_05G; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgtcag
|
||||
>HWI-D00393:103:C6KCUANXX:2:1110:14996:73808_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-43_b': 1, 'AW2-40_b': 1, 'AW2-07_b': 2}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=4; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagtaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1204:14078:1983_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-13_b': 1}; forward_score=72.0; score=367.706336455; seq_a_mismatch=0; forward_tag=tagtcgca; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=atatagcg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_04E; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttactaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1212:8502:98185_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-37_b': 1, 'AW2-35_a': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=2; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcatgactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1305:7874:81774_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-07_a': 1, 'AN4-34_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=2; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtcttgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1103:10874:79989_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-35_b': 1}; forward_score=72.0; score=367.706336455; seq_a_mismatch=0; forward_tag=gtgtacat; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=agcacagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_07C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttcaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1207:7817:59077_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-38_b': 1}; forward_score=72.0; score=366.948065081; seq_a_mismatch=0; forward_tag=tctactga; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=60.9420289855; avg_quality=57.9113924051; seq_a_single=33; score_norm=3.9885659248; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_08F; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgatcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1308:2120:40513_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN3-42_b': 1}; forward_score=72.0; score=367.703923809; seq_a_mismatch=0; forward_tag=atgatcgc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3043478261; avg_quality=59.1012658228; seq_a_single=33; score_norm=3.99678178053; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=actctgct; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_03B; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcattcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2206:6280:74968_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=acacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-40_a': 1}; forward_score=66.0; score=367.706336455; seq_a_mismatch=0; forward_tag=gatcgcga; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=catcagtc; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=05_08H; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttgaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1215:13979:31122_CONS_SUB_SUB_CMP ali_length=93; seq_ab_match=93; tail_quality=37.0; reverse_match=tttgttgcttaattgcga; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-34_b': 1}; forward_score=72.0; score=371.70314446; seq_a_mismatch=0; forward_tag=atgatcgc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.6861313869; avg_quality=59.4140127389; seq_a_single=32; score_norm=3.99680800494; reverse_score=66.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=99; status=full; mode=alignment; head_quality=37.0; position=11_08B; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggtaagggtctcgttcgtta
|
||||
>HWI-D00393:103:C6KCUANXX:2:2208:15903:75212_CONS_SUB_SUB ali_length=92; seq_ab_match=91; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-01_b': 1}; forward_score=72.0; score=359.811368897; seq_a_mismatch=1; forward_tag=actagatc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.0072463768; avg_quality=58.8417721519; seq_a_single=33; score_norm=3.91099314019; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tcagtgtc; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_02G; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagtaggttaaggtctcgtttgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1203:16969:99847_CONS_SUB_SUB ali_length=92; seq_ab_match=91; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-40_b': 1}; forward_score=72.0; score=359.526419012; seq_a_mismatch=0; forward_tag=ctgcgtac; seq_b_mismatch=1; start=ctaaa; experiment=australie; mid_quality=60.9782608696; avg_quality=57.9430379747; seq_a_single=33; score_norm=3.90789585883; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_08H; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataacaatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2213:12449:50581_CONS_SUB_SUB_CMP status=full; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-45_b': 1, 'AN5-25_b': 1, 'AN4-22_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; goodAli=Alignement; count=3; seq_length=100; mode=alignment; head_quality=37.0;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggtataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2310:15600:75905_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-03_a': 1}; forward_score=72.0; score=367.701511163; seq_a_mismatch=0; forward_tag=gtacgact; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.2753623188; avg_quality=59.0759493671; seq_a_single=33; score_norm=3.99675555612; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=gtgtacat; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=03_03A; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggtaagggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1214:16466:5047_CONS_SUB_SUB status=full; merged_sample={'AN2-07_b': 1, 'AN1-17_a': 1, 'AN3-25_b': 1, 'AN4-23_b': 1, 'AW2-35_a': 1}; seq_b_insertion=0; seq_a_insertion=0; seq_a_mismatch=0; forward_score=72.0; seq_b_deletion=0; seq_a_deletion=0; count=5; seq_length=100; start=ctaaa; experiment=australie; reverse_score=72.0; mode=alignment; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcgggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1306:6166:18686_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=24.8; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-39_b': 1}; forward_score=72.0; score=200.442729055; seq_a_mismatch=0; forward_tag=gatgatct; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=40.5289855072; avg_quality=38.6898734177; seq_a_single=33; score_norm=2.17872531582; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=27.2; position=11_08G; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggctagagtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2312:19984:25051_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-03_b': 1}; forward_score=72.0; score=367.703923809; seq_a_mismatch=0; forward_tag=acacacac; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3043478261; avg_quality=59.1012658228; seq_a_single=33; score_norm=3.99678178053; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=actctgct; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_03A; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttagagtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1209:10424:5048_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-43_b': 1}; forward_score=72.0; score=367.706336455; seq_a_mismatch=0; forward_tag=acgacgag; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=agtgctac; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_09C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggataaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1306:10017:29340_CONS_SUB_SUB_CMP merged_sample={'AN4-36_b': 1, 'AN4-12_b': 1, 'AW2-07_a': 1}; forward_score=72.0; direction=reverse; seq_b_insertion=0; seq_a_insertion=0; seq_a_mismatch=0; seq_b_deletion=0; status=full; seq_a_deletion=0; count=3; seq_length=100; start=ctaaa; experiment=australie; reverse_score=72.0; mode=alignment; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttagcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1116:1609:19254_CONS_SUB_SUB ali_length=93; seq_ab_match=93; tail_quality=34.4; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-45_b': 1}; forward_score=72.0; score=365.502727331; seq_a_mismatch=0; forward_tag=atcagtca; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=55.8905109489; avg_quality=52.9936305732; seq_a_single=32; score_norm=3.93013685302; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=agtgctac; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=31.9; position=11_09E; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgtttt
|
||||
>HWI-D00393:103:C6KCUANXX:2:1116:18814:29744_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-35_a': 1}; forward_score=72.0; score=367.048675141; seq_a_mismatch=0; forward_tag=acgacgag; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=61.7101449275; avg_quality=58.582278481; seq_a_single=33; score_norm=3.9896595124; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=actagatc; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=03_07C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcagattaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1301:18017:5670_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=91; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-29_b': 1}; forward_score=72.0; score=307.503017136; seq_a_mismatch=0; forward_tag=atcagtca; seq_b_mismatch=1; start=ctaaa; experiment=australie; mid_quality=48.0362318841; avg_quality=46.0632911392; seq_a_single=33; score_norm=3.3424240993; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=agcacagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=27.9; position=11_07E; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagccggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2304:14057:23271_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'ADR-47_b': 1, 'AN3-35_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=2; seq_length=100; status=full; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataattatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1105:1482:86390_CONS_SUB_SUB_CMP ali_length=94; seq_ab_match=94; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-13_b': 1}; forward_score=72.0; score=375.690301881; seq_a_mismatch=0; forward_tag=atcagtca; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=63.0735294118; avg_quality=59.7307692308; seq_a_single=31; score_norm=3.99670533916; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=156; reverse_tag=cgagtcgt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_11E; seq_b_single=31;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgtaaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1214:1498:16792_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=36.4; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-01_a': 1}; forward_score=72.0; score=367.691974388; seq_a_mismatch=0; forward_tag=gatgatct; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.2608695652; avg_quality=59.0253164557; seq_a_single=33; score_norm=3.99665189552; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=acagcaca; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=03_02G; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggctgaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2112:6296:18402_CONS_SUB_SUB_CMP reverse_score=72.0; count=2; direction=reverse; seq_b_insertion=0; experiment=australie; seq_b_deletion=0; status=full; seq_a_deletion=0; seq_length=100; start=ctaaa; merged_sample={'AN4-11_b': 1, 'AN4-17_b': 1}; seq_a_insertion=0; mode=alignment; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggaataactatttagcaggttaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2202:15115:92220_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-35_b': 1}; forward_score=72.0; score=367.703923809; seq_a_mismatch=0; forward_tag=gtgtacat; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3043478261; avg_quality=59.1012658228; seq_a_single=33; score_norm=3.99678178053; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=agcacagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_07C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggtccgggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2308:15218:31319_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=35.1; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-30_a': 1}; forward_score=72.0; score=367.379880648; seq_a_mismatch=0; forward_tag=gcgtcagc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=61.7463768116; avg_quality=58.4936708861; seq_a_single=33; score_norm=3.99325957226; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=agactatg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=06_01F; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactagttagcaggttaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1303:8962:10788_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=91; tail_quality=35.6; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-40_b': 1}; forward_score=72.0; score=328.577396734; seq_a_mismatch=0; forward_tag=ctgcgtac; seq_b_mismatch=1; start=ctaaa; experiment=australie; mid_quality=51.2898550725; avg_quality=49.2721518987; seq_a_single=33; score_norm=3.57149344276; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=35.1; position=11_08H; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactttttagcaggttaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1309:18593:53694_CONS_SUB_SUB_CMP ali_length=92; seq_a_deletion=0; reverse_score=72.0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-43_b': 1, 'ABR-41_a': 1, 'AW2-35_a': 1}; forward_score=72.0; seq_a_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; status=full; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=3; seq_length=100; mode=alignment; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactacttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1208:4517:87099_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-03_a': 1}; forward_score=72.0; score=367.701511163; seq_a_mismatch=0; forward_tag=gtacgact; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.2753623188; avg_quality=59.0759493671; seq_a_single=33; score_norm=3.99675555612; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=gtgtacat; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=03_03A; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagaaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1115:14275:7184_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-45_b': 1}; forward_score=72.0; score=367.706336455; seq_a_mismatch=0; forward_tag=atcagtca; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=agtgctac; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_09E; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttagagtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1209:11513:82442_CONS_SUB_SUB_CMP ali_length=94; seq_ab_match=94; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-39_a': 1}; forward_score=72.0; score=375.685590398; seq_a_mismatch=0; forward_tag=gatgatct; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=63.0294117647; avg_quality=59.6923076923; seq_a_single=31; score_norm=3.996655217; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=156; reverse_tag=actagatc; goodAli=Alignement; count=1; seq_length=98; status=full; mode=alignment; head_quality=37.0; position=03_07G; seq_b_single=31;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1214:6399:72570_CONS_SUB_SUB ali_length=92; seq_ab_match=88; tail_quality=24.5; reverse_match=tttgtctgcttaattacg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-30_a': 1}; forward_score=72.0; score=255.892896628; seq_a_mismatch=3; forward_tag=tctactga; seq_b_mismatch=1; start=ctaaa; experiment=australie; mid_quality=40.4057971014; avg_quality=38.5253164557; seq_a_single=33; score_norm=2.78144452857; reverse_score=66.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tactatac; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=26.6; position=03_06F; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgtgcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1305:3473:19356_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-07_b': 1}; forward_score=72.0; score=367.635869076; seq_a_mismatch=0; forward_tag=tactatac; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=61.9782608696; avg_quality=58.8164556962; seq_a_single=33; score_norm=3.99604205518; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=actctgct; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_03F; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcgtaactatttagcaggttaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2302:5940:68325_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-37_b': 1}; forward_score=72.0; score=367.706336455; seq_a_mismatch=0; forward_tag=atcagtca; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3333333333; avg_quality=59.1265822785; seq_a_single=33; score_norm=3.99680800494; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_08E; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggtcgaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2309:13769:62059_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=91; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-35_a': 1}; forward_score=72.0; score=359.470664833; seq_a_mismatch=0; forward_tag=acgacgag; seq_b_mismatch=1; start=ctaaa; experiment=australie; mid_quality=61.7536231884; avg_quality=58.6202531646; seq_a_single=33; score_norm=3.90728983514; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=actagatc; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=03_07C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaagttctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2315:8947:22476_CONS_SUB_SUB ali_length=93; seq_ab_match=93; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN3-25_a': 1}; forward_score=72.0; score=368.159719936; seq_a_mismatch=0; forward_tag=acacacac; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=58.4744525547; avg_quality=55.7388535032; seq_a_single=32; score_norm=3.95870666598; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=agactatg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=05_01A; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactgtttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1301:19819:95569_CONS_SUB_SUB_CMP ali_length=94; seq_ab_match=94; tail_quality=37.0; reverse_match=tttgtctttaattccgat; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-34_b': 1}; forward_score=72.0; score=375.699952465; seq_a_mismatch=0; forward_tag=tcagtgtc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=63.1911764706; avg_quality=59.8333333333; seq_a_single=31; score_norm=3.99680800494; reverse_score=60.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=156; reverse_tag=tcagtgtc; goodAli=Alignement; count=1; seq_length=98; status=full; mode=alignment; head_quality=37.0; position=12_02B; seq_b_single=31;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgtt
|
||||
>HWI-D00393:103:C6KCUANXX:2:1313:4613:34271_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=32.3; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW1-11_a': 1}; forward_score=72.0; score=313.551003229; seq_a_mismatch=0; forward_tag=gtcacgtc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=56.6594202899; avg_quality=53.1518987342; seq_a_single=33; score_norm=3.40816307858; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=cgctctcg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=25.6; position=02_09C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggtcaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2113:10988:9799_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=30.2; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-13_b': 1}; forward_score=72.0; score=361.020650934; seq_a_mismatch=0; forward_tag=atcagtca; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=55.6086956522; avg_quality=52.4936708861; seq_a_single=33; score_norm=3.92413751015; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=cgagtcgt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=31.8; position=11_11E; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaatgtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2113:5686:82397_CONS_SUB_SUB_CMP ali_length=93; seq_ab_match=93; tail_quality=36.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'blk-12_b': 1}; forward_score=72.0; score=371.343139227; seq_a_mismatch=0; forward_tag=ctatgcta; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.1532846715; avg_quality=58.7643312102; seq_a_single=32; score_norm=3.99293698094; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=ctgcgtac; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=35.1; position=08_12E; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggatagggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2311:15976:57660_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=91; tail_quality=30.1; reverse_match=tttgtctggttaattccg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-39_b': 1}; forward_score=72.0; score=346.55597612; seq_a_mismatch=0; forward_tag=gatgatct; seq_b_mismatch=1; start=ctaaa; experiment=australie; mid_quality=56.8550724638; avg_quality=53.8037974684; seq_a_single=33; score_norm=3.76691278391; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=35.4; position=11_08G; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggtgaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2205:20527:78743_CONS_SUB_SUB ali_length=95; seq_ab_match=93; tail_quality=29.1; reverse_match=tttgtctgcttaatggcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-12_b': 1}; forward_score=72.0; score=351.353534518; seq_a_mismatch=1; forward_tag=catcagtc; seq_b_mismatch=1; start=ctaaa; experiment=australie; mid_quality=50.2074074074; avg_quality=47.8709677419; seq_a_single=30; score_norm=3.69845825808; reverse_score=66.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=155; reverse_tag=ctatgcta; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=35.1; position=11_05D; seq_b_single=30;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtcgcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1104:5688:6100_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-46_b': 1}; forward_score=72.0; score=367.370471331; seq_a_mismatch=0; forward_tag=tctactga; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.0362318841; avg_quality=58.8670886076; seq_a_single=33; score_norm=3.99315729707; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=agtgctac; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_09F; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtcccattcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1111:18652:56309_CONS_SUB_SUB ali_length=93; seq_ab_match=93; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN2-12_a': 1}; forward_score=72.0; score=371.700731814; seq_a_mismatch=0; forward_tag=atatagcg; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.7299270073; avg_quality=59.4522292994; seq_a_single=32; score_norm=3.99678206251; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=tatgtcag; goodAli=Alignement; count=1; seq_length=99; status=full; mode=alignment; head_quality=37.0; position=04_04D; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1211:20612:10566_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-38_b': 1}; forward_score=72.0; score=367.703923809; seq_a_mismatch=0; forward_tag=tctactga; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3043478261; avg_quality=59.1012658228; seq_a_single=33; score_norm=3.99678178053; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_08F; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataaccatttagctggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2113:19027:63568_CONS_SUB_SUB_CMP ali_length=93; seq_ab_match=93; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-38_b': 1}; forward_score=72.0; score=371.700731814; seq_a_mismatch=0; forward_tag=tctactga; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.7299270073; avg_quality=59.4267515924; seq_a_single=32; score_norm=3.99678206251; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=36.6; position=11_08F; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagtaggctagagtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2201:15565:85738_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=32.1; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-23_b': 1}; forward_score=72.0; score=365.670520501; seq_a_mismatch=0; forward_tag=actagatc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=59.5289855072; avg_quality=56.3670886076; seq_a_single=33; score_norm=3.97467957066; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=ctatgcta; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_05G; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcatatctatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2215:13270:16769_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-01_b': 1}; forward_score=72.0; score=367.703923809; seq_a_mismatch=0; forward_tag=actagatc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3043478261; avg_quality=59.1012658228; seq_a_single=33; score_norm=3.99678178053; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tcagtgtc; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=09_02G; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgtccgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1102:18567:11128_CONS_SUB_SUB_CMP ali_length=93; seq_ab_match=93; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN2-10_b': 1}; forward_score=72.0; score=370.995083415; seq_a_mismatch=0; forward_tag=gtcgtaga; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=61.8248175182; avg_quality=58.5732484076; seq_a_single=32; score_norm=3.98919444533; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=atatagcg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=35.6; position=10_04B; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttgacataactatttagcaggttaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:1106:7644:40758_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=90; tail_quality=34.2; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-35_b': 1}; forward_score=72.0; score=296.115079326; seq_a_mismatch=2; forward_tag=acgacgag; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=54.1449275362; avg_quality=51.6075949367; seq_a_single=33; score_norm=3.21864216659; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=tagctagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=34.0; position=11_08C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgttac
|
||||
>HWI-D00393:103:C6KCUANXX:2:1111:17524:16890_CONS_SUB_SUB ali_length=94; seq_ab_match=94; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN2-12_b': 1}; forward_score=72.0; score=375.680651297; seq_a_mismatch=0; forward_tag=gactgatg; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.9264705882; avg_quality=59.6025641026; seq_a_single=31; score_norm=3.99660267337; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=156; reverse_tag=atatagcg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=10_04D; seq_b_single=31;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttgtcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2109:4640:21588_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN5-10_b': 1}; forward_score=72.0; score=367.701511163; seq_a_mismatch=0; forward_tag=atgatcgc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.2173913043; avg_quality=59.0253164557; seq_a_single=33; score_norm=3.99675555612; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=cgagtcgt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_11B; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcggtcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2212:14824:56282_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW1-11_a': 1}; forward_score=72.0; score=367.703923809; seq_a_mismatch=0; forward_tag=gtcacgtc; seq_b_mismatch=0; start=ctaaa; experiment=australie; mid_quality=62.3043478261; avg_quality=59.1012658228; seq_a_single=33; score_norm=3.99678178053; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=cgctctcg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=02_09C; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggtcaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2306:10336:10418_CONS_SUB_SUB ali_length=92; seq_ab_match=92; tail_quality=37.0; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW2-35_b': 1, 'AN4-23_b': 1}; forward_score=72.0; seq_a_mismatch=0; seq_b_mismatch=0; start=ctaaa; experiment=australie; seq_a_single=33; reverse_score=72.0; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; goodAli=Alignement; count=2; seq_length=100; status=full; mode=alignment; head_quality=37.0; seq_b_single=33;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataaccatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2216:11206:55822_CONS_SUB_SUB_CMP ali_length=93; seq_ab_match=92; tail_quality=29.8; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AW1-30_a': 1}; forward_score=72.0; score=357.173125277; seq_a_mismatch=0; forward_tag=cgctctcg; seq_b_mismatch=1; start=ctaaa; experiment=australie; mid_quality=54.6642335766; avg_quality=51.4777070064; seq_a_single=32; score_norm=3.84057123954; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=gactgatg; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=29.5; position=02_12A; seq_b_single=32;
|
||||
ctaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcttaactatttagcaggttaaggtctcgttcgttat
|
||||
>HWI-D00393:103:C6KCUANXX:2:2303:4215:99753_CONS_SUB_SUB ali_length=93; seq_ab_match=93; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgtattgcc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-41_b': 1}; forward_score=66.0; score=371.70314446; seq_a_mismatch=0; forward_tag=gtacgact; seq_b_mismatch=0; start=gaaaa; experiment=australie; mid_quality=62.7591240876; avg_quality=59.4522292994; seq_a_single=32; score_norm=3.99680800494; reverse_score=72.0; direction=forward; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=157; reverse_tag=agtgctac; goodAli=Alignement; count=1; seq_length=99; status=full; mode=alignment; head_quality=36.6; position=11_09A; seq_b_single=32;
|
||||
gaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagagt
|
||||
tggcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2209:18822:35652_CONS_SUB_SUB_CMP ali_length=92; seq_ab_match=92; tail_quality=37.0; reverse_match=tttgtctgcttaattgcg; seq_a_deletion=0; forward_match=tcacagacctgttattgc; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; merged_sample={'AN4-29_b': 1}; forward_score=72.0; score=366.357546614; seq_a_mismatch=0; forward_tag=atcagtca; seq_b_mismatch=0; start=gtaaa; experiment=australie; mid_quality=60.7898550725; avg_quality=57.7784810127; seq_a_single=33; score_norm=3.98214724581; reverse_score=72.0; direction=reverse; seq_b_insertion=0; seq_b_deletion=0; seq_a_insertion=0; seq_length_ori=158; reverse_tag=agcacagt; goodAli=Alignement; count=1; seq_length=100; status=full; mode=alignment; head_quality=37.0; position=11_07E; seq_b_single=33;
|
||||
gtaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttggcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:2212:12163:84900_CONS_SUB_SUB merged_sample={'AN4-36_b': 1, 'AN4-39_b': 1, 'AN4-12_b': 1, 'AW2-03_b': 1, 'ABR-42_a': 1, 'AN4-46_b': 1, 'AN4-23_b': 1, 'AN4-37_b': 1, 'AN5-23_b': 1, 'AN5-41_b': 1, 'AW1-18_a': 1, 'AN4-35_b': 1, 'AW2-35_b': 1, 'AW2-35_a': 1}; reverse_score=72.0; seq_b_insertion=0; seq_a_mismatch=0; seq_b_deletion=0; seq_b_mismatch=0; seq_a_deletion=0; count=14; seq_length=99; start=taaaa; experiment=australie; seq_a_insertion=0; mode=alignment; status=full; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; goodAli=Alignement;
|
||||
taaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagagt
|
||||
tggcataactatttagcaggttaaggtctcgttcgttaa
|
||||
>HWI-D00393:103:C6KCUANXX:2:1210:8971:79507_CONS_SUB_SUB_CMP merged_sample={'AN5-41_b': 1, 'AW2-01_a': 3, 'AN5-25_b': 2, 'AW2-07_b': 4, 'AN5-23_b': 3, 'AW2-01_b': 1}; ali_length=92; seq_b_insertion=0; seq_b_deletion=0; status=full; seq_a_deletion=0; count=14; seq_length=100; start=ttaaa; experiment=australie; seq_a_insertion=0; mode=alignment; seq_length_ori=158; forward_primer=tcacagacctgttattgc; reverse_primer=tttgtctgsttaattscg; seq_a_single=33; seq_b_single=33; goodAli=Alignement;
|
||||
ttaaaacttccgtcggctaatcgccgacagtccctctaagaagttgactaccaacgagag
|
||||
ttagcataactattcagtaggttaaggtctcgttcgttaa
|
||||
12
pkg/obiformats/kseq/test.seq
Normal file
12
pkg/obiformats/kseq/test.seq
Normal file
@@ -0,0 +1,12 @@
|
||||
>1 {"taxid" : 1234, "specie_name" : "Lupus lupus"}
|
||||
acgtacgtacgtagc
|
||||
>2 {"taxid" : 3243, "specie_name" : "Gallus gallus"} test
|
||||
acgatcgatc
|
||||
@3 {"taxid" : 3243, "specie_name" : "Gallus gallus"} test2
|
||||
cgctagcatagc
|
||||
cgatatgactta
|
||||
+
|
||||
78wo82usd980
|
||||
d88fau
|
||||
|
||||
238ud8
|
||||
Reference in New Issue
Block a user