First commit

pkg/obiformats/kseq/kseq_test.c

@@ -0,0 +1,27 @@
+#include <zlib.h>
+#include <stdio.h>
+#include "kseq.h"
+KSEQ_INIT(gzFile, gzread)
+
+int main(int argc, char *argv[])
+{
+	gzFile fp;
+	kseq_t *seq;
+	int l;
+	if (argc == 1) {
+		fprintf(stderr, "Usage: %s <in.seq>\n", argv[0]);
+		return 1;
+	}
+	fp = gzopen(argv[1], "r");
+	seq = kseq_init(fp);
+	while ((l = kseq_read(seq)) >= 0) {
+		printf("name: %s\n", seq->name.s);
+		if (seq->comment.l) printf("comment: %s\n", seq->comment.s);
+		printf("seq: %s\n", seq->seq.s);
+		if (seq->qual.l) printf("qual: %s\n", seq->qual.s);
+	}
+	printf("return value: %d\n", l);
+	kseq_destroy(seq);
+	gzclose(fp);
+	return 0;
+}