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rename the iterator class

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coissac committed 2023-01-22 22:04:17 +01:00
1 parent 4592855095
commit f97f92df72
37 files changed
+399 -354
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pkg/obichunk/subchunks.go
+4 -4
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@@ -56,9 +56,9 @@ func (by _By) Sort(seqs []sSS) {
// End of the sort interface
//
func ISequenceSubChunk(iterator obiiter.IBioSequenceBatch,
func ISequenceSubChunk(iterator obiiter.IBioSequence,
classifier *obiseq.BioSequenceClassifier,
sizes ...int) (obiiter.IBioSequenceBatch, error) {
sizes ...int) (obiiter.IBioSequence, error) {
bufferSize := iterator.BufferSize()
nworkers := 4
@@ -71,7 +71,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequenceBatch,
bufferSize = sizes[1]
}
newIter := obiiter.MakeIBioSequenceBatch(bufferSize)
newIter := obiiter.MakeIBioSequence(bufferSize)
newIter.Add(nworkers)
@@ -88,7 +88,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequenceBatch,
return neworder
}
ff := func(iterator obiiter.IBioSequenceBatch,
ff := func(iterator obiiter.IBioSequence,
classifier *obiseq.BioSequenceClassifier) {
ordered := make([]sSS, 100)