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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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4
pkg/obitools/obimultiplex/demultiplex.go
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@@ -10,7 +10,7 @@ import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
)
func IExtractBarcode(iterator obiiter.IBioSequenceBatch) (obiiter.IBioSequenceBatch, error) {
func IExtractBarcode(iterator obiiter.IBioSequence) (obiiter.IBioSequence, error) {
opts := make([]obingslibrary.WithOption, 0, 10)
@@ -37,7 +37,7 @@ func IExtractBarcode(iterator obiiter.IBioSequenceBatch) (obiiter.IBioSequenceBa
newIter = newIter.Rebatch(obioptions.CLIBatchSize())
}
var unidentified obiiter.IBioSequenceBatch
var unidentified obiiter.IBioSequence
if CLIUnidentifiedFileName() != "" {
log.Printf("Unassigned sequences saved in file: %s\n", CLIUnidentifiedFileName())
unidentified, newIter = newIter.DivideOn(obiseq.HasAttribute("demultiplex_error"),