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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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pkg/obitools/obipairing/pairing.go
+2 -2
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@@ -206,7 +206,7 @@ func AssemblePESequences(seqA, seqB *obiseq.BioSequence,
func IAssemblePESequencesBatch(iterator obiiter.IPairedBioSequenceBatch,
gap float64, delta, minOverlap int,
minIdentity float64,
withStats bool, sizes ...int) obiiter.IBioSequenceBatch {
withStats bool, sizes ...int) obiiter.IBioSequence {
nworkers := runtime.NumCPU() * 3 / 2
buffsize := iterator.BufferSize()
@@ -219,7 +219,7 @@ func IAssemblePESequencesBatch(iterator obiiter.IPairedBioSequenceBatch,
buffsize = sizes[1]
}
newIter := obiiter.MakeIBioSequenceBatch(buffsize)
newIter := obiiter.MakeIBioSequence(buffsize)
newIter.Add(nworkers)