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Patch a bug in obitag when a taxon from the reference library is unknown in the taxonomy

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Eric Coissac
2025-03-27 14:28:15 +01:00
parent 5a3705b6bb
commit fd80249b85
2 changed files with 2 additions and 2 deletions
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pkg/obitools/obitag/obitag.go
+1 -1
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@@ -257,8 +257,8 @@ func CLIAssignTaxonomy(iterator obiiter.IBioSequence,
references[j] = seq
refcounts[j] = obikmer.Count4Mer(seq, &buffer, nil)
taxon := seq.Taxon(taxo)
taxa.Set(j, taxon)
if taxon != nil {
taxa.Set(j, taxon)
j++
} else {
obilog.Warnf("Taxid %s is not described in the taxonomy %s."+