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https://github.com/metabarcoding/obitools4.git
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Eric Coissac
f76e7f03c6
Introduces k-mer distance structures and SIMD implementation for LCS simulation. Adds support for concurrent, read-only k-mer partners, implements data preparation for SIMD alignment, and adds comprehensive testing and benchmarking capabilities.
22 lines
539 B
Go
22 lines
539 B
Go
//go:build !goexperiment.simd
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package obikmer
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func kmerLCSBatch(query uint64, partners []uint64, k int, out []KmerLCSResult) {
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kmerLCSBatchScalar(query, partners, k, out)
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}
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// kmerLCSPrepared has nothing to precompute without SIMD.
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type kmerLCSPrepared struct {
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k int
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partners []uint64
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}
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func prepareKmerLCS(partners []uint64, k int) kmerLCSPrepared {
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return kmerLCSPrepared{k: k, partners: partners}
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}
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func (p *kmerLCSPrepared) align(query uint64, out []KmerLCSResult) {
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kmerLCSBatchScalar(query, p.partners, p.k, out)
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}
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