Eric Coissac c188580aac Replace Rebatch with RebatchBySize using default batch parameters ...

Replace calls to Rebatch(size) with RebatchBySize(obidefault.BatchMem(), obidefault.BatchSizeMax()) in batchiterator.go, fragment.go, and obirefidx.go to ensure consistent use of default memory and size limits for batch rebatching.

2026-03-13 15:16:33 +01:00

..

batch.go

remove the slice pool management

2024-09-24 16:31:30 +02:00

batchiterator.go

Replace Rebatch with RebatchBySize using default batch parameters

2026-03-13 15:16:33 +01:00

distribute.go

introduce obidefault

2025-01-27 17:12:45 +01:00

extract_taxonomy.go

Debug on taxonomy extraction and CSV conversion

2025-07-07 15:29:40 +02:00

fragment.go

Replace Rebatch with RebatchBySize using default batch parameters

2026-03-13 15:16:33 +01:00

limitmemory.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

merge.go

Patch a bug in fasta and fastq reading

2024-06-21 14:28:57 +02:00

numbering.go

Add the --number option to obiannotate

2025-04-22 18:35:51 +02:00

paired.go

introduce obidefault

2025-01-27 17:12:45 +01:00

pipe.go

change the model for representing paired reads and extend its usage to other commands

2023-02-23 23:35:58 +01:00

sequence_workers.go

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

speed.go

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

workers.go

patch a bug in obiannotate

2025-03-11 16:35:38 +01:00