obitools4

mirror of https://github.com/metabarcoding/obitools4.git synced 2026-03-25 13:30:52 +00:00

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Eric Coissac 00dcd78e84 Refactor k-mer encoding and frequency filtering with KmerSet

This commit refactors the k-mer encoding logic to handle ambiguous bases more consistently and introduces a KmerSet type for better management of k-mer collections. The frequency filter now works with KmerSet instead of roaring bitmaps directly, and the API has been updated to support level-based frequency queries. Additionally, the commit updates the version and commit hash.

2026-02-05 14:41:59 +01:00

counting.go

Swich to the system min and max functions and remove the version from obiutils

2024-05-30 08:27:24 +02:00

debruijn.go

correction of several small bugs

2024-09-03 06:08:07 -03:00

encodefourmer.go

Refactor k-mer encoding and frequency filtering with KmerSet

2026-02-05 14:41:59 +01:00

encodekmer_test.go

Ajout du filtre de fréquence avec v niveaux Roaring Bitmaps