Eric Coissac 434d2e5930 +feat: add support for map_summaries aggregation in obisummary ...

- Implement merging logic of `map summaries` across datasets
  - Ensure proper initialization and population in multi-threaded context
- Add `map_summaries` to final output dictionary when non-empty

2026-04-16 14:58:18 +02:00

..

obiannotate

obiannotate --cut bug

2025-12-18 14:11:11 +01:00

obiclean

Fix CompressStream call to use compressed variable

2026-03-12 18:48:22 +01:00

obicleandb

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obiclust

some renaming of functions

2025-08-06 15:54:50 -04:00

obiconsensus

Manage a lock on StatsOnValues

2025-06-17 16:46:11 +02:00

obiconvert

refactor: replace single batch size with min/max bounds and memory limits

2026-03-13 15:07:35 +01:00

obicount

Add automatic garbage collection on ApatPattern

2022-01-24 17:26:30 +01:00

obicsv

Refactor: Extract utility function for string reversal

2026-04-16 13:42:51 +02:00

obidemerge

Manage a lock on StatsOnValues

2025-06-17 16:46:11 +02:00

obidistribute

refactor: replace fixed batch size with dynamic flushing based on count and memory

2026-03-16 22:06:44 +01:00

obigrep

Several bugs dicoverd during the doc writing

2025-04-04 16:59:27 +02:00

obijoin

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obik

Refactor k-mer matching pipeline with improved concurrency and memory management

2026-02-10 22:10:36 +01:00

obikmersim

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obilandmark

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obimatrix

obimatrix bugs

2025-11-21 13:24:06 +01:00

obimicrosat

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obimultiplex

debug obimultiplex

2025-11-06 15:43:13 +01:00

obipairing

Several bugs dicoverd during the doc writing

2025-04-04 16:59:27 +02:00

obipcr

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obirefidx

Replace Rebatch with RebatchBySize using default batch parameters

2026-03-13 15:16:33 +01:00

obiscript

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obisplit

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obisummary

+feat: add support for map_summaries aggregation in obisummary

2026-04-16 14:58:18 +02:00

obitag

Patch a bug in obitag

2025-06-04 14:47:28 +02:00

obitagpcr

introduce obidefault

2025-01-27 17:12:45 +01:00

obitaxonomy

Changes to be committed:

2025-06-04 09:48:10 +02:00

obiuniq

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00