obitools/obitools4
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15d1f1fd80516aee8e04a1e9eec224adc254321c
obitools4/pkg/obitools
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Eric Coissac c188580aac Replace Rebatch with RebatchBySize using default batch parameters 
Replace calls to Rebatch(size) with RebatchBySize(obidefault.BatchMem(), obidefault.BatchSizeMax()) in batchiterator.go, fragment.go, and obirefidx.go to ensure consistent use of default memory and size limits for batch rebatching.
2026-03-13 15:16:33 +01:00
..
obiannotate
obiannotate --cut bug
2025-12-18 14:11:11 +01:00
obiclean
Fix CompressStream call to use compressed variable
2026-03-12 18:48:22 +01:00
obicleandb
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obiclust
some renaming of functions
2025-08-06 15:54:50 -04:00
obiconsensus
Manage a lock on StatsOnValues
2025-06-17 16:46:11 +02:00
obiconvert
refactor: replace single batch size with min/max bounds and memory limits
2026-03-13 15:07:35 +01:00
obicount
Add automatic garbage collection on ApatPattern
2022-01-24 17:26:30 +01:00
obicsv
Add progress bar configuration and conditional display
2026-02-08 16:14:02 +01:00
obidemerge
Manage a lock on StatsOnValues
2025-06-17 16:46:11 +02:00
obidistribute
Patch a bug on compressed output
2025-02-05 14:18:24 +01:00
obigrep
Several bugs dicoverd during the doc writing
2025-04-04 16:59:27 +02:00
obijoin
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obik
Refactor k-mer matching pipeline with improved concurrency and memory management
2026-02-10 22:10:36 +01:00
obikmersim
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obilandmark
Add progress bar configuration and conditional display
2026-02-08 16:14:02 +01:00
obimatrix
obimatrix bugs
2025-11-21 13:24:06 +01:00
obimicrosat
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obimultiplex
debug obimultiplex
2025-11-06 15:43:13 +01:00
obipairing
Several bugs dicoverd during the doc writing
2025-04-04 16:59:27 +02:00
obipcr
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obirefidx
Replace Rebatch with RebatchBySize using default batch parameters
2026-03-13 15:16:33 +01:00
obiscript
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obisplit
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obisummary
Update obisummary to account new obiseq.StatsOnValues type
2025-06-19 17:21:30 +02:00
obitag
Patch a bug in obitag
2025-06-04 14:47:28 +02:00
obitagpcr
introduce obidefault
2025-01-27 17:12:45 +01:00
obitaxonomy
Changes to be committed:
2025-06-04 09:48:10 +02:00
obiuniq
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00