Eric Coissac 1ce5da9bee Support new sequence file formats and improve error handling ...

Add support for .gbff and .gbff.gz file extensions in sequence reader.

Update the logic to return an error instead of using NilIBioSequence when no sequence files are found, improving the error handling and user feedback.

2026-02-11 06:31:10 +01:00

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obiannotate

obiannotate --cut bug

2025-12-18 14:11:11 +01:00

obiclean

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obicleandb

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obiclust

some renaming of functions

2025-08-06 15:54:50 -04:00

obiconsensus

Manage a lock on StatsOnValues

2025-06-17 16:46:11 +02:00

obiconvert

Support new sequence file formats and improve error handling

2026-02-11 06:31:10 +01:00

obicount

Add automatic garbage collection on ApatPattern

2022-01-24 17:26:30 +01:00

obicsv

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obidemerge

Manage a lock on StatsOnValues

2025-06-17 16:46:11 +02:00

obidistribute

Patch a bug on compressed output

2025-02-05 14:18:24 +01:00

obigrep

Several bugs dicoverd during the doc writing

2025-04-04 16:59:27 +02:00

obijoin

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obik

Refactor k-mer matching pipeline with improved concurrency and memory management

2026-02-10 22:10:36 +01:00

obikmersim

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obilandmark

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obimatrix

obimatrix bugs

2025-11-21 13:24:06 +01:00

obimicrosat

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obimultiplex

debug obimultiplex

2025-11-06 15:43:13 +01:00

obipairing

Several bugs dicoverd during the doc writing

2025-04-04 16:59:27 +02:00

obipcr

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obirefidx

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obiscript

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obisplit

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obisummary

Update obisummary to account new obiseq.StatsOnValues type

2025-06-19 17:21:30 +02:00

obitag

Patch a bug in obitag

2025-06-04 14:47:28 +02:00

obitagpcr

introduce obidefault

2025-01-27 17:12:45 +01:00

obitaxonomy

Changes to be committed:

2025-06-04 09:48:10 +02:00

obiuniq

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00