obitools/obitools4
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36327c79c82b7f6c02af3b8a6597696ae348af51
obitools4/pkg/obitools
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Eric Coissac 36327c79c8 Changes to be committed: 
modified:   .gitignore
	new file:   pkg/obitax/default_taxonomy.go
	modified:   pkg/obitax/taxon.go
	modified:   pkg/obitax/taxonnode.go
	modified:   pkg/obitax/taxonomy.go
	modified:   pkg/obitax/taxonset.go
	modified:   pkg/obitax/taxonslice.go
	modified:   pkg/obitools/obifind/iterator.go
	modified:   pkg/obitools/obifind/options.go
2024-11-16 10:01:49 +01:00
..
obiannotate
Add option related to agrep match on obigrep and obiannotate
2024-09-09 16:52:13 +02:00
obiclean
Add some code refactoring from the blackboard branch
2024-08-02 12:35:46 +02:00
obicleandb
Add some code refactoring from the blackboard branch
2024-08-02 12:35:46 +02:00
obiconsensus
remove the slice pool management
2024-09-24 16:31:30 +02:00
obiconvert
Add option related to agrep match on obigrep and obiannotate
2024-09-09 16:52:13 +02:00
obicount
Add automatic garbage collection on ApatPattern
2022-01-24 17:26:30 +01:00
obicsv
Fisrt versin of the two levels indexing
2024-07-12 15:17:48 +02:00
obidemerge
first version of obidemerge, obijoin and a new filter for obicleandb but to be finnished
2024-07-10 15:21:42 +02:00
obidistribute
Change path of the obitools pkg
2023-11-29 12:14:37 +01:00
obifind
Changes to be committed:
2024-11-16 10:01:49 +01:00
obigrep
Add option related to agrep match on obigrep and obiannotate
2024-09-09 16:52:13 +02:00
obijoin
Add some code refactoring from the blackboard branch
2024-08-02 12:35:46 +02:00
obikmersim
EndGapFree alignments
2024-09-24 15:52:12 +02:00
obilandmark
Add some code refactoring from the blackboard branch
2024-08-02 12:35:46 +02:00
obimatrix
remove the slice pool management
2024-09-24 16:31:30 +02:00
obimicrosat
Add option to obimicrosat to control microsat length and orientation
2024-08-30 11:16:43 +02:00
obimultiplex
Bugs in the non stric tag matching algorithm
2024-06-10 21:19:26 +02:00
obipairing
Add some code refactoring from the blackboard branch
2024-08-02 12:35:46 +02:00
obipcr
Swich to the system min and max functions and remove the version from obiutils
2024-05-30 08:27:24 +02:00
obirefidx
Add some code refactoring from the blackboard branch
2024-08-02 12:35:46 +02:00
obiscript
Update of obipcr and homogenization of logging
2024-05-16 15:18:30 +02:00
obisplit
correction of bug and format in obisplit
2024-06-05 17:18:44 +02:00
obisummary
remove the slice pool management
2024-09-24 16:31:30 +02:00
obitag
Add some code refactoring from the blackboard branch
2024-08-02 12:35:46 +02:00
obitag2
Adds the obimicrosat command
2024-08-05 15:31:20 +02:00
obitagpcr
Changes to be committed:
2024-10-29 16:53:10 +01:00
obiuniq
Add obiminion first version
2024-05-14 08:16:12 +02:00