Eric Coissac 3f8c0d6a2f Replace MakeBioSequence call by NewBioSequence call, ...

Implements a new file format guesser
Adds some more API doc


Former-commit-id: 9837bf1c28beca6ddb599b367f93548950ba83c1

2023-08-30 19:59:46 +02:00

..

kseq

First commit

2022-01-13 23:27:39 +01:00

ncbitaxdump

Rename the Length methods Len to follow GO standart

2022-11-17 11:09:58 +01:00

batch_of_files_reader.go

First attempt for obiconsensus... The graph traversing algorithm is too simple

2023-03-27 19:51:10 +07:00

batch_reader_type.go

rename the iterator class

2023-01-22 22:04:17 +01:00

csv_writer.go

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

dispatcher.go

A small bug in logging and API documentation

2023-08-14 15:21:30 +02:00

ecopcr_read.go

Add some doc and switch to the parallel gzip library

2023-08-25 14:36:38 +02:00

embl_read.go

Patch a bug for multiple amplicon per sequence.

2023-03-31 15:10:25 +02:00

fastseq_header.go

A small bug in logging and API documentation

2023-08-14 15:21:30 +02:00

fastseq_interface.go

Big change iin the data model, and a first version of obiuniq

2022-02-21 19:00:23 +01:00

fastseq_json_header.go

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

fastseq_obi_header.go

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

fastseq_read.c

Patch reading of annotation from stdin

2022-09-29 14:48:05 +02:00

fastseq_read.go

Reduce redundante call to bytes.ToLower and substitute the last call by an home made version doing the conversion in place

2023-03-28 11:43:04 +07:00

fastseq_read.h

First commit

2022-01-13 23:27:39 +01:00

fastseq_write_fasta.go

Adds doc

2023-08-14 10:04:16 +02:00

fastseq_write_fastq.go

Adds some docs

2023-08-14 00:12:17 +02:00

genbank_read.go

Limit allocation during genbank parsing

2023-03-28 22:42:58 +07:00

ngsfilter_read.go

Patch a bug in ngsfilter reading and sample matching

2022-09-28 14:29:19 +02:00

options.go

add the --skip-empty option

2023-07-17 14:24:02 +02:00

universal_read.go

Replace MakeBioSequence call by NewBioSequence call,

2023-08-30 19:59:46 +02:00

universal_write.go

Patch the empty batch bug

2023-03-07 20:16:06 +07:00