Eric Coissac 40769bf827 Add memory-based batching support ...

Implement memory-aware batch sizing with --batch-mem CLI option, enabling adaptive batching based on estimated sequence memory footprint. Key changes:
- Added _BatchMem and related getters/setters in pkg/obidefault
- Implemented RebatchBySize() in pkg/obiter for memory-constrained batching
- Added BioSequence.MemorySize() for conservative memory estimation
- Integrated batch-mem option in pkg/obioptions with human-readable size parsing (e.g., 128K, 64M, 1G)
- Added obiutils.ParseMemSize/FormatMemSize for unit conversion
- Enhanced pool GC in pkg/obiseq/pool.go to trigger explicit GC for large slice discards
- Updated sequence_reader.go to apply memory-based rebatching when enabled

2026-03-13 14:54:21 +01:00

..

options.go

Add memory-based batching support

2026-03-13 14:54:21 +01:00

subcommand.go

Refactor k-mer index management with subcommands and enhanced metadata support

2026-02-10 06:49:31 +01:00

version.go

4.4.21: Parallel builds, robust installation, and rope-based parsing enhancements

2026-03-13 11:59:32 +01:00