Eric Coissac 434d2e5930 +feat: add support for map_summaries aggregation in obisummary ...

- Implement merging logic of `map summaries` across datasets
  - Ensure proper initialization and population in multi-threaded context
- Add `map_summaries` to final output dictionary when non-empty

2026-04-16 14:58:18 +02:00

..

obialign

work on obiclean chimera detection

2025-10-20 17:29:47 +02:00

obiapat

debug obimultiplex

2025-11-06 15:43:13 +01:00

obichunk

Fix classifier cloning and reset in chunk processing

2026-02-08 15:52:25 +01:00

obicorazick

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obidefault

refactor: replace single batch size with min/max bounds and memory limits

2026-03-13 15:07:35 +01:00

obidist

Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup

2026-02-05 17:39:23 +01:00

obiformats

Replace SplitInTwo with LeftSplitInTwo/RightSplitInTwo for precise splitting

2026-03-12 18:41:28 +01:00

obifp

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obigraph

Add obiminion first version

2024-05-14 08:16:12 +02:00

obiiter

refactor: replace fixed batch size with dynamic flushing based on count and memory

2026-03-16 22:06:44 +01:00

obiitercsv

break the import cyccle

2025-01-27 17:23:07 +01:00

obikmer

Bugfix: result of 0 4mers not caught if sequence length == 3

2026-04-10 14:05:30 +02:00

obilog

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obilua

chore: bump version to 4.4.39

2026-04-14 14:48:29 +02:00

obingslibrary

Changes to be committed:

2025-06-17 09:06:42 +02:00

obioptions

Release 4.4.40

2026-04-14 14:48:41 +02:00

obiphylo

Changes to be committed:

2025-06-04 09:48:10 +02:00

obiseq

Refactor: Extract utility function for string reversal

2026-04-16 13:42:51 +02:00

obistats

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obisuffix

Swich to the system min and max functions and remove the version from obiutils

2024-05-30 08:27:24 +02:00

obitable

many changes ;-)

2023-12-05 15:28:29 +01:00

obitax

Replace SplitInTwo with LeftSplitInTwo/RightSplitInTwo for precise splitting

2026-03-12 18:41:28 +01:00

obitools

+feat: add support for map_summaries aggregation in obisummary

2026-04-16 14:58:18 +02:00

obiutils

Add memory-based batching support

2026-03-13 14:54:21 +01:00