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60f27c1dc87eb2cc799e4c6f963d9af9b6b8c70e
obitools4/pkg
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Eric Coissac 60f27c1dc8 Add error handling for ambiguous bases in k-mer encoding 
This commit introduces error handling for ambiguous DNA bases (N, R, Y, W, S, K, M, B, D, H, V) in k-mer encoding. It adds new functions IterNormalizedKmersWithErrors and EncodeNormalizedKmersWithErrors that track and encode the number of ambiguous bases in each k-mer using error markers in the top 2 bits. The commit also updates the version string to reflect the latest changes.
2026-02-04 21:45:08 +01:00
..
obialign
work on obiclean chimera detection
2025-10-20 17:29:47 +02:00
obiapat
debug obimultiplex
2025-11-06 15:43:13 +01:00
obichunk
Implémentation du filtrage unique basé sur séquence et catégories
2026-01-14 19:18:17 +01:00
obicorazick
Make the replace function of the eval language accepting regex
2025-04-10 15:17:15 +02:00
obidefault
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obiformats
debug url reading
2025-11-18 15:30:20 +01:00
obifp
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obigraph
Add obiminion first version
2024-05-14 08:16:12 +02:00
obiiter
Debug on taxonomy extraction and CSV conversion
2025-07-07 15:29:40 +02:00
obiitercsv
break the import cyccle
2025-01-27 17:23:07 +01:00
obikmer
Add error handling for ambiguous bases in k-mer encoding
2026-02-04 21:45:08 +01:00
obilog
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obilua
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obingslibrary
Changes to be committed:
2025-06-17 09:06:42 +02:00
obioptions
Add error handling for ambiguous bases in k-mer encoding
2026-02-04 21:45:08 +01:00
obiphylo
Changes to be committed:
2025-06-04 09:48:10 +02:00
obiseq
Update obiuniq for very large dataset
2025-12-18 14:11:11 +01:00
obistats
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obisuffix
Swich to the system min and max functions and remove the version from obiutils
2024-05-30 08:27:24 +02:00
obitable
many changes ;-)
2023-12-05 15:28:29 +01:00
obitax
debug url reading
2025-11-18 15:30:20 +01:00
obitools
obiannotate --cut bug
2025-12-18 14:11:11 +01:00
obiutils
implementation de obilowmask
2025-11-18 15:30:20 +01:00