Eric Coissac c57e788459 Fix GenBank parsing and add release notes script ...

This commit fixes an issue in the GenBank parser where empty parts were being included in the parsed data. It also introduces a new script `release_notes.sh` to automate the generation of GitHub-compatible release notes for OBITools4 versions, including support for LLM summarization and various output modes.

2026-02-20 11:37:51 +01:00

..

kseq

some more cleaning

2024-01-16 21:11:38 +01:00

batch_of_files_reader.go

Update of obipcr and homogenization of logging

2024-05-16 15:18:30 +02:00

batch_reader_type.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

csv_read.go

Refactoring of the default values

2025-01-24 18:09:59 +01:00

csv_writer.go

Refactoring of the default values

2025-01-24 18:09:59 +01:00

csviterator.go

Make sequence files recognized as a taxonomy

2025-03-14 14:22:22 +01:00

csvtaxdump_read.go

Changes to be committed:

2025-06-04 09:48:10 +02:00

dispatcher.go

reduce the memory impact of obiuniq.

2024-11-27 13:30:16 +01:00

ecopcr_read.go

Changes to be committed:

2025-06-04 09:48:10 +02:00

embl_read.go

Add a reading option on readers to convet U to T

2025-07-07 15:29:07 +02:00

empty_file.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

fastaseq_read.go

Add a reading option on readers to convet U to T

2025-07-07 15:29:07 +02:00

fastqseq_read.go

Add a reading option on readers to convet U to T

2025-07-07 15:29:07 +02:00

fastqseq_write_generic.go

patch for impot bug

2023-12-01 16:31:35 +01:00

fastseq_header.go

Change the API of workers

2024-03-02 16:03:46 -04:00

fastseq_interface.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

fastseq_json_header.go

Manage a lock on StatsOnValues

2025-06-17 16:46:11 +02:00

fastseq_obi_header.go

Manage a lock on StatsOnValues

2025-06-17 16:46:11 +02:00

fastseq_read.c

Patch reading of annotation from stdin

2022-09-29 14:48:05 +02:00

fastseq_read.go

Refactoring of the default values

2025-01-24 18:09:59 +01:00

fastseq_read.h

First commit

2022-01-13 23:27:39 +01:00

fastseq_write_fasta.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

fastseq_write_fastq.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

fastseq_write_with_index.go

many changes ;-)

2023-12-05 15:28:29 +01:00

file_chunk_read.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

file_chunk_write.go

Refactoring of the default values

2025-01-24 18:09:59 +01:00

genbank_read.go

Fix GenBank parsing and add release notes script

2026-02-20 11:37:51 +01:00

json_writer.go

Patch a small bug on json write

2024-11-29 18:39:18 +01:00

ncbitaxdump_read.go

Changes to be committed:

2025-06-04 09:48:10 +02:00

ncbitaxdump_readtar.go

Changes to be committed:

2025-06-04 09:48:10 +02:00

newick_write.go

Changes to be committed:

2025-06-04 09:48:10 +02:00

ngsfilter_read.go

Patch the fastq detector

2025-08-08 10:23:03 -04:00

options.go

Debug on taxonomy extraction and CSV conversion

2025-07-07 15:29:40 +02:00

taxonomy_read.go

Changes to be committed:

2025-06-04 09:48:10 +02:00

universal_read.go

debug url reading

2025-11-18 15:30:20 +01:00

universal_write.go

Patch a bug on writing to stdout, and add clearer error on openning data files

2024-08-13 09:45:28 +02:00