Eric Coissac 6c6c369ee2 Add k-mer encoding and decoding functions with normalized k-mer support ...

This commit introduces new functions for encoding and decoding k-mers, including support for normalized k-mers. It also updates the frequency filter and k-mer set implementations to use the new encoding functions, providing zero-allocation encoding for better performance. The commit hash has been updated to reflect the latest changes.

2026-02-05 15:51:52 +01:00

..

counting.go

Swich to the system min and max functions and remove the version from obiutils

2024-05-30 08:27:24 +02:00

debruijn.go

correction of several small bugs

2024-09-03 06:08:07 -03:00

encodefourmer.go

Refactor k-mer encoding and frequency filtering with KmerSet

2026-02-05 14:41:59 +01:00

encodekmer_test.go

Ajout du filtre de fréquence avec v niveaux Roaring Bitmaps

2026-02-04 21:21:10 +01:00

encodekmer.go

Add k-mer encoding and decoding functions with normalized k-mer support

2026-02-05 15:51:52 +01:00

frequency_filter.go

Add k-mer encoding and decoding functions with normalized k-mer support

2026-02-05 15:51:52 +01:00

kmer_set_attributes.go

Refactor KmerSet and FrequencyFilter to use immutable K parameter and consistent Copy/Clone methods

2026-02-05 15:32:36 +01:00

kmer_set_group.go

Refactor KmerSet and FrequencyFilter to use immutable K parameter and consistent Copy/Clone methods

2026-02-05 15:32:36 +01:00

kmer_set_persistence.go

Refactor KmerSet and FrequencyFilter to use immutable K parameter and consistent Copy/Clone methods

2026-02-05 15:32:36 +01:00

kmer_set.go

Add k-mer encoding and decoding functions with normalized k-mer support

2026-02-05 15:51:52 +01:00

kmermap.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

kmernorm_test.go

implementation de obilowmask

2025-11-18 15:30:20 +01:00

kmernorm.go

implementation de obilowmask

2025-11-18 15:30:20 +01:00

kmernormint_test.go

implementation de obilowmask

2025-11-18 15:30:20 +01:00

kmernormint.go

implementation de obilowmask

2025-11-18 15:30:20 +01:00