Eric Coissac 75bb635a6c Implement Banded LCS calculation with scalar and SIMD support ...

Introduces the BandedLCS function for efficient LCS scoring, supporting both scalar and SIMD implementations. Adds comprehensive unit tests, benchmarking utilities, and error handling for sequence constraints.

2026-11-03 09:28:46 +11:00

..

alignment.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

backtracking.go

EndGapFree alignments

2024-09-24 15:52:12 +02:00

dnamatrix.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

fastlcs_bench_test.go

Implement Banded LCS calculation with scalar and SIMD support

2026-11-03 09:28:46 +11:00

fastlcs.go

add the --min-sample-count option to obiclean.

2025-02-24 08:48:31 +01:00

fastlcsegf.go

Implement Banded LCS calculation with scalar and SIMD support

2026-11-03 09:28:46 +11:00

fourbitsencode.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

is_d0_or_d1.go

Correction on obiformat of bug leading to partial parsing and add godocs

2024-05-07 10:54:12 +02:00

lcsband_nosimd.go

Implement Banded LCS calculation with scalar and SIMD support

2026-11-03 09:28:46 +11:00

lcsband_scalar.go

Implement Banded LCS calculation with scalar and SIMD support

2026-11-03 09:28:46 +11:00

lcsband_simd.go

Implement Banded LCS calculation with scalar and SIMD support

2026-11-03 09:28:46 +11:00

lcsband_test.go

Implement Banded LCS calculation with scalar and SIMD support

2026-11-03 09:28:46 +11:00

lcsband.go

Implement Banded LCS calculation with scalar and SIMD support

2026-11-03 09:28:46 +11:00

locatepattern_test.go

fix: validate inputs and fix coordinate offsets in pattern matching

2026-08-19 17:25:44 +02:00

locatepattern.go

fix: validate inputs and fix coordinate offsets in pattern matching

2026-08-19 17:25:44 +02:00

pairedendalign.go

Changes to be committed:

2025-02-23 17:37:56 +01:00

readalign.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00