coissac 88a9e38952 Took better advantage of taxonomy structure and LCA upperbound base on common word. Accelleration by a factor two of obirefidx compared to previous version. ...

Former-commit-id: 35f40498d642058e9dbff20128d11303a314018d

2023-05-04 09:32:47 +02:00

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obialign

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

obiapat

Patch a bug for multiple amplicon per sequence.

2023-03-31 15:10:25 +02:00

obichunk

Optimize memory allocation of the apat algorithms

2023-03-28 19:37:05 +07:00

obicorazick

Adds Aho-Corasick matching to obiannotate

2023-02-09 15:59:11 +01:00

obiformats

Patch a bug for multiple amplicon per sequence.

2023-03-31 15:10:25 +02:00

obiiter

Patch a bug for multiple amplicon per sequence.

2023-03-31 15:10:25 +02:00

obikmer

Correction of one base deletion in the consensus

2023-04-19 09:12:12 +02:00

obingslibrary

Rename forward and reverse mitmatches tags

2023-04-18 12:08:13 +02:00

obioptions

Small change in parallelisation tuning

2023-04-05 14:15:47 +02:00

obiseq

Patch a bug in obiseq.GetSlice

2023-04-07 17:44:11 +02:00

obistats

A first functional version of obiclean

2022-08-20 18:01:07 +02:00

obisuffix

First attempt for obiconsensus... The graph traversing algorithm is too simple

2023-03-27 19:51:10 +07:00

obitax

Restore old obisort and add LCA functionnality to obiannotate.

2023-05-02 10:43:22 +02:00

obitools

Took better advantage of taxonomy structure and LCA upperbound base on common word. Accelleration by a factor two of obirefidx compared to previous version.

2023-05-04 09:32:47 +02:00

obiutils

Restore old obisort and add LCA functionnality to obiannotate.

2023-05-02 10:43:22 +02:00