Eric Coissac 8cc02aa9c1 Refactor sequence processing for parallel loading and memory management ...

This commit introduces significant changes to the sequence processing pipeline, implementing parallel loading, k-mer budget control, explicit memory management, and refined logic for pair evaluation and resolution.

2026-11-03 22:53:54 +11:00

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obialign

Refactor similarity engine and implement parallel clustering

2026-11-03 14:04:32 +11:00

obiannotate

Add the --number option to obiannotate

2025-04-22 18:35:51 +02:00

obiclean

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obicleandb

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obiclust

Implement core clustering logic and scoring features

2026-11-03 09:32:40 +11:00

obicomplement

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obiconsensus

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obiconvert

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obicount

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obicsv

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obidemerge

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obidistribute

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obigrep

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obijoin

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obik

Refactor k-mer index management with subcommands and enhanced metadata support

2026-02-10 06:49:31 +01:00

obikmermatch

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obikmersimcount

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obilandmark

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obimatrix

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obimicrosat

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obimultiplex

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obioligotag

Feature: Implement constrained k-mer generation and clique search

2026-11-03 09:25:34 +11:00

obipairing

[obitools] Add validation for paired files and config template support

2026-04-29 15:01:37 +02:00

obipcr

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obiprimers

Refactor sequence processing for parallel loading and memory management

2026-11-03 22:53:54 +11:00

obireffamidx

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obirefidx

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obiscript

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obisplit

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obisummary

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00

obitag

Changes to be committed:

2025-06-04 09:48:10 +02:00

obitagpcr

[obitools] Add validation for paired files and config template support

2026-04-29 15:01:37 +02:00

obitaxonomy

Changes to be committed:

2025-06-04 09:48:10 +02:00

obiuniq

add a first version of the inline documentation

2025-03-12 14:40:42 +01:00