Eric Coissac 90cf780f23 fix: update uint128 test expectations and improve log formatting ...

Corrects expected values for division and comparison operations in the uint128 test suite. Updates obilandmark to use log.Fatalf instead of log.Fatal, ensuring sequence ID, taxid, and taxonomy name are correctly interpolated in fatal error messages.

2026-08-19 17:33:57 +02:00

..

obialign

fix: validate inputs and fix coordinate offsets in pattern matching

2026-08-19 17:25:44 +02:00

obiapat

fix: validate inputs and fix coordinate offsets in pattern matching

2026-08-19 17:25:44 +02:00

obichunk

Fix classifier cloning and reset in chunk processing

2026-02-08 15:52:25 +01:00

obicorazick

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obidefault

refactor: replace single batch size with min/max bounds and memory limits

2026-03-13 15:07:35 +01:00

obidist

Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup

2026-02-05 17:39:23 +01:00

obiformats

refactor: improve FASTQ error messages with explicit filenames

2026-08-19 16:47:36 +02:00

obifp

fix: update uint128 test expectations and improve log formatting

2026-08-19 17:33:57 +02:00

obigraph

Add obiminion first version

2024-05-14 08:16:12 +02:00

obiiter

refactor: replace fixed batch size with dynamic flushing based on count and memory

2026-03-16 22:06:44 +01:00

obiitercsv

break the import cyccle

2025-01-27 17:23:07 +01:00

obikmer

Correct Shannon entropy bias for canonical k-mers

2026-05-17 14:54:57 +08:00

obilog

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obilua

chore: bump version to 4.4.39

2026-04-14 14:48:29 +02:00

obingslibrary

fix: respect config defaults when --allowed-mismatches is unset

2026-08-19 16:40:48 +02:00

obioptions

Release 4.4.46

2026-07-02 08:50:00 +02:00

obiphylo

Changes to be committed:

2025-06-04 09:48:10 +02:00

obiseq

fix: correct duplicated typos in GVal function names

2026-06-02 15:00:48 +02:00

obistats

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obisuffix

Swich to the system min and max functions and remove the version from obiutils

2024-05-30 08:27:24 +02:00

obitable

many changes ;-)

2023-12-05 15:28:29 +01:00

obitax

feat(obiconvert): add --raw-taxid option and refactor taxID formatting

2026-04-30 16:57:38 +02:00

obitools

fix: update uint128 test expectations and improve log formatting

2026-08-19 17:33:57 +02:00

obiutils

feat: add JSON input support for biological sequences

2026-07-03 10:16:55 +02:00