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https://github.com/metabarcoding/obitools4.git
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Eric Coissac
a0d8187fd6
Adds support for Hamming distance, constrained k-mer generation, and optimized Longest Common Subsequence (LCS) calculations using scalar, batch, and SIMD methods. This includes new methods for k-mer distance calculation, structures for k-mer constraints, and SIMD-based batch processing for LCS to improve performance and correctness.
8 lines
176 B
Go
8 lines
176 B
Go
//go:build !goexperiment.simd
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package obikmer
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func kmerLCSBatch(query uint64, partners []uint64, k int, out []KmerLCSResult) {
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kmerLCSBatchScalar(query, partners, k, out)
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}
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