Eric Coissac a2b26712b2 refactor: replace fixed batch size with dynamic flushing based on count and memory ...

Replace the old fixed batch-size mechanism in Distribute with a dynamic strategy that flushes batches when either BatchSizeMax() sequences or BatchMem() bytes are reached per key. This aligns with the RebatchBySize strategy and removes the optional sizes parameter. Also update related code: simplify Lua wrapper to accept optional capacity, and fix buffer growth logic in worker.go using slices.Grow correctly. Remove unused BatchSize() usage from obidistribute.

2026-03-16 22:06:44 +01:00

..

batch.go

remove the slice pool management

2024-09-24 16:31:30 +02:00

batchiterator.go

Replace Rebatch with RebatchBySize using default batch parameters

2026-03-13 15:16:33 +01:00

distribute.go

refactor: replace fixed batch size with dynamic flushing based on count and memory

2026-03-16 22:06:44 +01:00

extract_taxonomy.go

Debug on taxonomy extraction and CSV conversion

2025-07-07 15:29:40 +02:00

fragment.go

Replace Rebatch with RebatchBySize using default batch parameters

2026-03-13 15:16:33 +01:00

limitmemory.go

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

merge.go

Patch a bug in fasta and fastq reading

2024-06-21 14:28:57 +02:00

numbering.go

Add the --number option to obiannotate

2025-04-22 18:35:51 +02:00

paired.go

introduce obidefault

2025-01-27 17:12:45 +01:00

pipe.go

change the model for representing paired reads and extend its usage to other commands

2023-02-23 23:35:58 +01:00

sequence_workers.go

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

speed.go

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

workers.go

patch a bug in obiannotate

2025-03-11 16:35:38 +01:00