Eric Coissac aa468ec462 Refactor FrequencyFilter to use KmerSetGroup ...

Refactor FrequencyFilter to inherit from KmerSetGroup for better code organization and maintainability. This change replaces the direct bitmap management with a group-based approach, simplifying the implementation and improving readability.

2026-02-05 14:46:57 +01:00

..

obialign

work on obiclean chimera detection

2025-10-20 17:29:47 +02:00

obiapat

debug obimultiplex

2025-11-06 15:43:13 +01:00

obichunk

Implémentation du filtrage unique basé sur séquence et catégories

2026-01-14 19:18:17 +01:00

obicorazick

Make the replace function of the eval language accepting regex

2025-04-10 15:17:15 +02:00

obidefault

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obiformats

debug url reading

2025-11-18 15:30:20 +01:00

obifp

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obigraph

Add obiminion first version

2024-05-14 08:16:12 +02:00

obiiter

Debug on taxonomy extraction and CSV conversion

2025-07-07 15:29:40 +02:00

obiitercsv

break the import cyccle

2025-01-27 17:23:07 +01:00

obikmer

Refactor FrequencyFilter to use KmerSetGroup

2026-02-05 14:46:57 +01:00

obilog

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obilua

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obingslibrary

Changes to be committed:

2025-06-17 09:06:42 +02:00

obioptions

Refactor k-mer encoding and frequency filtering with KmerSet

2026-02-05 14:41:59 +01:00

obiphylo

Changes to be committed:

2025-06-04 09:48:10 +02:00

obiseq

Update obiuniq for very large dataset

2025-12-18 14:11:11 +01:00

obistats

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obisuffix

Swich to the system min and max functions and remove the version from obiutils

2024-05-30 08:27:24 +02:00

obitable

many changes ;-)

2023-12-05 15:28:29 +01:00

obitax

debug url reading

2025-11-18 15:30:20 +01:00

obitools

obiannotate --cut bug

2025-12-18 14:11:11 +01:00

obiutils

implementation de obilowmask

2025-11-18 15:30:20 +01:00