obitools/obitools4
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obitools4/pkg
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Eric Coissac afc9ffda85 chore: bump version to 4.4.25 and fix CGO_CFLAGS for cross-compilation 
Update version to 4.4.25 in version.txt and pkg/obioptions/version.go.

Fix CGO_CFLAGS in release.yml by replacing generic '-I/usr/include' with architecture-specific paths (x86_64-linux-gnu and aarch64-linux-gnu) to ensure correct header inclusion during cross-compilation on Linux.
2026-03-13 19:30:29 +01:00
..
obialign
work on obiclean chimera detection
2025-10-20 17:29:47 +02:00
obiapat
debug obimultiplex
2025-11-06 15:43:13 +01:00
obichunk
Fix classifier cloning and reset in chunk processing
2026-02-08 15:52:25 +01:00
obicorazick
Add progress bar configuration and conditional display
2026-02-08 16:14:02 +01:00
obidefault
refactor: replace single batch size with min/max bounds and memory limits
2026-03-13 15:07:35 +01:00
obidist
Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup
2026-02-05 17:39:23 +01:00
obiformats
Replace SplitInTwo with LeftSplitInTwo/RightSplitInTwo for precise splitting
2026-03-12 18:41:28 +01:00
obifp
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obigraph
Add obiminion first version
2024-05-14 08:16:12 +02:00
obiiter
Replace Rebatch with RebatchBySize using default batch parameters
2026-03-13 15:16:33 +01:00
obiitercsv
break the import cyccle
2025-01-27 17:23:07 +01:00
obikmer
Refactor k-mer matching pipeline with improved concurrency and memory management
2026-02-10 22:10:36 +01:00
obilog
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obilua
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obingslibrary
Changes to be committed:
2025-06-17 09:06:42 +02:00
obioptions
chore: bump version to 4.4.25 and fix CGO_CFLAGS for cross-compilation
2026-03-13 19:30:29 +01:00
obiphylo
Changes to be committed:
2025-06-04 09:48:10 +02:00
obiseq
Add memory-based batching support
2026-03-13 14:54:21 +01:00
obistats
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obisuffix
Swich to the system min and max functions and remove the version from obiutils
2024-05-30 08:27:24 +02:00
obitable
many changes ;-)
2023-12-05 15:28:29 +01:00
obitax
Replace SplitInTwo with LeftSplitInTwo/RightSplitInTwo for precise splitting
2026-03-12 18:41:28 +01:00
obitools
Replace Rebatch with RebatchBySize using default batch parameters
2026-03-13 15:16:33 +01:00
obiutils
Add memory-based batching support
2026-03-13 14:54:21 +01:00