Eric Coissac b246025907 Optimize Fasta batch formatting ...

Optimize FormatFastaBatch to pre-allocate buffer and write sequences directly without intermediate strings, improving performance and memory usage.

2026-03-10 15:43:59 +01:00

..

obialign

work on obiclean chimera detection

2025-10-20 17:29:47 +02:00

obiapat

debug obimultiplex

2025-11-06 15:43:13 +01:00

obichunk

Fix classifier cloning and reset in chunk processing

2026-02-08 15:52:25 +01:00

obicorazick

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obidefault

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obidist

Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup

2026-02-05 17:39:23 +01:00

obiformats

Optimize Fasta batch formatting

2026-03-10 15:43:59 +01:00

obifp

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obigraph

Add obiminion first version

2024-05-14 08:16:12 +02:00

obiiter

Add progress bar configuration and conditional display

2026-02-08 16:14:02 +01:00

obiitercsv

break the import cyccle

2025-01-27 17:23:07 +01:00

obikmer

Refactor k-mer matching pipeline with improved concurrency and memory management

2026-02-10 22:10:36 +01:00

obilog

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obilua

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obingslibrary

Changes to be committed:

2025-06-17 09:06:42 +02:00

obioptions

Bump version to 4.4.18

2026-02-20 11:40:43 +01:00

obiphylo

Changes to be committed:

2025-06-04 09:48:10 +02:00

obiseq

Update obiuniq for very large dataset

2025-12-18 14:11:11 +01:00

obistats

Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

2025-03-25 16:44:46 +01:00

obisuffix

Swich to the system min and max functions and remove the version from obiutils

2024-05-30 08:27:24 +02:00

obitable

many changes ;-)

2023-12-05 15:28:29 +01:00

obitax

debug url reading

2025-11-18 15:30:20 +01:00

obitools

Support new sequence file formats and improve error handling

2026-02-11 06:31:10 +01:00

obiutils

implementation de obilowmask

2025-11-18 15:30:20 +01:00