Eric Coissac c156f11947 Introduce primer pair searching functionality ...

This change introduces the `obiprimers` command-line tool and a complete search pipeline for identifying primer pairs. It includes new data structures for pair evaluation, comprehensive search configuration options, and detailed CSV output handling for results.

2026-11-03 22:40:27 +11:00

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testdata

Introduce new sequence matching logic and corpus handling

2026-11-03 22:35:51 +11:00

corpus.go

Introduce new sequence matching logic and corpus handling

2026-11-03 22:35:51 +11:00

match_naive.go

Introduce new sequence matching logic and corpus handling

2026-11-03 22:35:51 +11:00

match_seed.go

Refactor MatchWords indexing and introduce seed indexing

2026-11-03 22:38:11 +11:00

match_test.go

Refactor MatchWords indexing and introduce seed indexing

2026-11-03 22:38:11 +11:00

match.go

Introduce new sequence matching logic and corpus handling

2026-11-03 22:35:51 +11:00

pairs_eval.go

Introduce primer pair searching functionality

2026-11-03 22:40:27 +11:00

pairs_test.go

Introduce primer pair searching functionality

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pairs.go

Implement primer pair finding and evaluation logic

2026-11-03 22:37:03 +11:00

roles.go

Implement strict word finding and sequence filtering

2026-11-03 22:34:10 +11:00

search.go

Introduce primer pair searching functionality

2026-11-03 22:40:27 +11:00

taxa.go

Implement primer pair finding and evaluation logic

2026-11-03 22:37:03 +11:00

words_test.go

Introduce new sequence matching logic and corpus handling

2026-11-03 22:35:51 +11:00

words.go

Introduce new sequence matching logic and corpus handling

2026-11-03 22:35:51 +11:00