Eric Coissac c30a22d356 Refactor build workflow and update version ...

Update GitHub Actions workflow to use setup-go v5 and align with latest tooling practices.

Update version to 4.4.15 in version.txt and pkg/obioptions/version.go.

Add comprehensive documentation for the canonical super-kmer strategy, including:
- Analysis of index v1 limitations
- Experimental observations on super-kmer efficiency
- Detailed pipeline for building v3 index
- Explanation of minimizer-canonization
- Description of unitig construction and frequency filtering
- Storage format specifications for v3
- Aho-Corasick matching implementation

This change introduces a major improvement in index compactness and performance through the use of canonical super-kmers, unitigs, and efficient storage formats.

2026-02-11 22:57:28 +01:00

..

architechture

Fix super k-mer minimizer bijection and add validation test

2026-02-08 13:47:33 +01:00

Prospective

Refactor build workflow and update version

2026-02-11 22:57:28 +01:00