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Eric Coissac cecf90fa40 feat: add min/max filtering and saturating subtraction utilities 
Introduce generic and reflection-based utilities for filtering slices and maps by minimum/maximum thresholds, along with saturating subtraction. The `obiutils` package provides type-safe generic implementations alongside dynamic reflection dispatchers to handle arbitrary ordered and numeric types. These are exposed as GVAL expression functions in `obiseq`, extending the language's built-in filtering and numeric capabilities.
2026-05-14 20:58:24 +08:00
..
obialign
work on obiclean chimera detection
2025-10-20 17:29:47 +02:00
obiapat
debug obimultiplex
2025-11-06 15:43:13 +01:00
obichunk
Fix classifier cloning and reset in chunk processing
2026-02-08 15:52:25 +01:00
obicorazick
Add progress bar configuration and conditional display
2026-02-08 16:14:02 +01:00
obidefault
refactor: replace single batch size with min/max bounds and memory limits
2026-03-13 15:07:35 +01:00
obidist
Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup
2026-02-05 17:39:23 +01:00
obiformats
fix: validate non-empty sequence IDs in FASTA and FASTQ writers
2026-05-05 18:07:58 +02:00
obifp
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obigraph
Add obiminion first version
2024-05-14 08:16:12 +02:00
obiiter
refactor: replace fixed batch size with dynamic flushing based on count and memory
2026-03-16 22:06:44 +01:00
obiitercsv
break the import cyccle
2025-01-27 17:23:07 +01:00
obikmer
Bugfix: result of 0 4mers not caught if sequence length == 3
2026-04-10 14:05:30 +02:00
obilog
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obilua
chore: bump version to 4.4.39
2026-04-14 14:48:29 +02:00
obingslibrary
Changes to be committed:
2025-06-17 09:06:42 +02:00
obioptions
[4.4.2] Enhanced taxonomy handling, input robustness & PCR tag validation
2026-04-30 16:57:45 +02:00
obiphylo
Changes to be committed:
2025-06-04 09:48:10 +02:00
obiseq
feat: add min/max filtering and saturating subtraction utilities
2026-05-14 20:58:24 +08:00
obistats
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
obisuffix
Swich to the system min and max functions and remove the version from obiutils
2024-05-30 08:27:24 +02:00
obitable
many changes ;-)
2023-12-05 15:28:29 +01:00
obitax
feat(obiconvert): add --raw-taxid option and refactor taxID formatting
2026-04-30 16:57:38 +02:00
obitools
🔧 Rename mismatch fields to error in pcrtag.go
2026-04-29 15:29:25 +02:00
obiutils
feat: add min/max filtering and saturating subtraction utilities
2026-05-14 20:58:24 +08:00