Actualiser .gitmodules

.gitmodules

@@ -1,3 +1,3 @@
 [submodule "sumalibs"]
 	path = sumalibs
-	url = https://git.metabarcoding.org/obitools/sumalibs.git
+	url = https://forge.metabarcoding.org/obitools/sumalibs.git

mtcompare_sumaclust.c

@@ -15,10 +15,10 @@
 #include <math.h>
 #include <sys/time.h>
 
-#include "libfasta/sequence.h"
-#include "libutils/utilities.h"
-#include "liblcs/upperband.h"
-#include "liblcs/sse_banded_LCS_alignment.h"
+#include "sumalibs/libfasta/sequence.h"
+#include "sumalibs/libutils/utilities.h"
+#include "sumalibs/liblcs/upperband.h"
+#include "sumalibs/liblcs/sse_banded_LCS_alignment.h"
 
 #include "sumaclust.h"
 

sumaclust.c

@@ -12,18 +12,18 @@
 #include <math.h>
 #include <sys/time.h>
 
-#include "libutils/utilities.h"
-#include "libfasta/sequence.h"
-#include "libfasta/fasta_header_parser.h"
-#include "libfasta/fasta_header_handler.h"
-#include "libfasta/fasta_seq_writer.h"
-#include "liblcs/upperband.h"
-#include "liblcs/sse_banded_LCS_alignment.h"
+#include "sumalibs/libutils/utilities.h"
+#include "sumalibs/libfasta/sequence.h"
+#include "sumalibs/libfasta/fasta_header_parser.h"
+#include "sumalibs/libfasta/fasta_header_handler.h"
+#include "sumalibs/libfasta/fasta_seq_writer.h"
+#include "sumalibs/liblcs/upperband.h"
+#include "sumalibs/liblcs/sse_banded_LCS_alignment.h"
 
 #include "mtcompare_sumaclust.h"
 #include "sumaclust.h"
 
-#define VERSION "1.0.33"
+#define VERSION "1.0.36"
 
 
 /* ----------------------------------------------- */

sumaclust_user_manual.md

@@ -29,7 +29,8 @@ Untar the archive, go into the newly created directory and compile:
 ```
 tar –zxvf sumaclust_v[x.x.xx].tar.gz
 cd sumaclust_v[x.x.xx]
-make
+make -C sumalibs install
+make install
 ```
 
 You can compile Sumaclust with `clang`, which deactivates `OpenMP`, with: