obitools/sumaclust
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 4 Wiki Activity

mercier created page: home

Celine Mercier
2015-07-17 13:49:02 +02:00
parent 4a0cb4e13a
commit a54ef654da
1 changed files with 13 additions and 3 deletions
Download Patch File Download Diff File Expand all files Collapse all files

14
home.markdown

@@ -1,3 +1,9 @@
With the development of next-generation sequencing, efficient tools are needed to handle millions of sequences in reasonable amounts of time.
**Sumaclust** is a program developed by the LECA.
**Sumaclust** aims to cluster sequences in a way that is fast and exact at the same time. This tool has been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers.
**Sumaclust** clusters sequences using the same clustering algorithm as **UCLUST** and **CD-HIT**. This algorithm is mainly useful to detect the 'erroneous' sequences created during amplification and sequencing protocols, deriving from 'true' sequences.
Currently, **Sumaclust** is available as a program that you can download and install on Unix-like machines.
## Installing Sumaclust ## Installing Sumaclust
Download the archive on this page, then untar it, go into the newly created directory and compile: Download the archive on this page, then untar it, go into the newly created directory and compile:
@@ -6,10 +12,14 @@ Download the archive on this page, then untar it, go into the newly created dire
cd sumaclust_v[x.x.xx] cd sumaclust_v[x.x.xx]
make make
You can compile **sumaclust** with **clang**, which deactivates **OpenMP**, with: You can compile **Sumaclust** with **clang**, which deactivates **OpenMP**, with:
make CC=clang make CC=clang
See the user manual included in the archive for a complete documentation. See the user manual downloadable from this page and included in the archive for a complete documentation.
## See also
[**Sumatra**](https://git.metabarcoding.org/obitools/sumatra/wikis/home/) compares sequences using the same alignment methods as **Sumaclust**.
[sumaclust_v1.0.03.tar.gz](https://git.metabarcoding.org/obitools/sumaclust/uploads/aef291a0f2ca22d09a87f8c381ba11d8/sumaclust_v1.0.03.tar.gz) [sumaclust_v1.0.03.tar.gz](https://git.metabarcoding.org/obitools/sumaclust/uploads/aef291a0f2ca22d09a87f8c381ba11d8/sumaclust_v1.0.03.tar.gz)