obitools/ecopcr
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@117 60f365c0-8329-0410-b2a4-ec073aeeaa1d

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Eric Coissac
2007-09-24 10:06:00 +00:00
parent 471bf72bf9
commit 45c85a9f32
1 changed files with 2 additions and 2 deletions
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4
tools/ecoPCRFormat.py
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@ -300,9 +300,9 @@ def parseFasta(seq):
field = title[1].split('; ') field = title[1].split('; ')
else: else:
field=[] field=[]
info = dict(x.split('=') for x in field if '=' in x) info = dict(x.split('=',1) for x in field if '=' in x)
definition = ' '.join([x for x in field if '=' not in x]) definition = ' '.join([x for x in field if '=' not in x])
seq=(''.join([x.strip() for x in seq[1:]])).upper() seq=(''.join([x.strip() for x in seq[1:]])).upper()
return id,seq,definition,info return id,seq,definition,info