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syntax debug on ecopcr.c

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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@297 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
Eric Coissac
2011-05-25 16:35:30 +00:00
parent 01173d22cf
commit 8313c67a9b
1 changed files with 4 additions and 4 deletions
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8
src/ecopcr.c
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@ -138,7 +138,7 @@ void printRepeat(ecoseq_t *seq,
int32_t error1; int32_t error1;
int32_t error2; int32_t error2;
int32_t ldeta,rdelta; int32_t ldelta,rdelta;
char *amplifia = NULL; char *amplifia = NULL;
int32_t amplength; int32_t amplength;
@ -204,8 +204,8 @@ void printRepeat(ecoseq_t *seq,
superkingdom_name = "###"; superkingdom_name = "###";
} }
ldeta=(pos1 <= delta)?pos1:delta; ldelta=(pos1 <= delta)?pos1:delta;
rdelta(pos2+delta>=seqlength)?seqlength-pos2-1:delta; rdelta=(pos2+delta>=seqlength)?seqlength-pos2-1:delta;
amplifia = getSubSequence(seq->SQ,pos1-ldelta,pos2+rdelta); amplifia = getSubSequence(seq->SQ,pos1-ldelta,pos2+rdelta);
amplength= strlen(amplifia)-rdelta-ldelta; amplength= strlen(amplifia)-rdelta-ldelta;
@ -257,7 +257,7 @@ void printRepeat(ecoseq_t *seq,
amplifia[amplength - o2->patlen - o1->patlen]=0; amplifia[amplength - o2->patlen - o1->patlen]=0;
else else
{ {
delta=ldelta+rdelta+amplength-1; delta=ldelta+rdelta+amplength;
for (i=0;i<ldelta;i++) for (i=0;i<ldelta;i++)
amplifia[i]|=32; amplifia[i]|=32;
for (i=0;i<rdelta;i++) for (i=0;i<rdelta;i++)