obitools/ecopcr
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@40 60f365c0-8329-0410-b2a4-ec073aeeaa1d

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This commit is contained in:
Eric Coissac
2007-06-05 14:27:28 +00:00
parent 065f4fe0c6
commit a827cc0cfe
1 changed files with 6 additions and 4 deletions
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10
src/ecopcr.c
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@ -417,8 +417,7 @@ int main(int argc, char **argv)
taxonomy = read_taxonomy(prefix); taxonomy = read_taxonomy(prefix);
seq = ecoseq_iterator(prefix); seq = ecoseq_iterator(prefix);
checkedSequence = 0; checkedSequence = 0;
positiveSequence= 0; positiveSequence= 0;
amplifiatCount = 0; amplifiatCount = 0;
@ -427,13 +426,13 @@ int main(int argc, char **argv)
{ {
checkedSequence++; checkedSequence++;
/** /**
* check if the sequence should be ignored * check if current sequence should be ignored
**/ **/
if ( (g > 0) && (eco_is_taxid_ignored(excluded_taxid, g, taxonomy->taxons->taxon[seq->taxid].taxid)) ) if ( (g > 0) && (eco_is_taxid_ignored(excluded_taxid, g, taxonomy->taxons->taxon[seq->taxid].taxid)) )
goto next; goto next;
/** /**
* check the sequence is included * check current sequence is included
**/ **/
if ( (r > 0) && (!eco_is_taxid_included(taxonomy, restricted_taxid, r, taxonomy->taxons->taxon[seq->taxid].taxid)) ) if ( (r > 0) && (!eco_is_taxid_included(taxonomy, restricted_taxid, r, taxonomy->taxons->taxon[seq->taxid].taxid)) )
goto next; goto next;
@ -519,6 +518,9 @@ int main(int argc, char **argv)
seq = ecoseq_iterator(NULL); seq = ecoseq_iterator(NULL);
} }
ECOFREE(restricted_taxid, "Error: could not free restricted_taxid\n");
ECOFREE(excluded_taxid, "Error: could not free excluded_taxid\n");
return 0; return 0;
} }