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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@114 60f365c0-8329-0410-b2a4-ec073aeeaa1d

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This commit is contained in:
Eric Coissac
2007-09-24 09:48:08 +00:00
parent 6cd1141130
commit bc4c7656c6
15 changed files with 1494 additions and 240 deletions
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15
src/libecoPCR/ecoseq.c
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@ -79,7 +79,9 @@ ecoseq_t *new_ecoseq_with_data( char *AC,
}
/**
* ?? used ??
**/
FILE *open_ecoseqdb(const char *filename,
int32_t *sequencecount)
{
@ -140,6 +142,13 @@ ecoseq_t *readnext_ecoseq(FILE *f)
return seq;
}
/**
* Open the sequences database (.sdx file)
* @param prefix name of the database (radical without extension)
* @param index integer
*
* @return file object
*/
FILE *open_seqfile(const char *prefix,int32_t index)
{
char filename_buffer[1024];
@ -153,7 +162,7 @@ FILE *open_seqfile(const char *prefix,int32_t index)
prefix,
index);
fprintf(stderr,"Coucou %s\n",filename_buffer);
fprintf(stderr,"# Coucou %s\n",filename_buffer);
if (filename_length >= 1024)
@ -164,7 +173,7 @@ FILE *open_seqfile(const char *prefix,int32_t index)
input=open_ecorecorddb(filename_buffer,&seqcount,0);
if (input)
fprintf(stderr,"Reading file %s containing %d sequences...\n",
fprintf(stderr,"# Reading file %s containing %d sequences...\n",
filename_buffer,
seqcount);