obitools/ecopcr
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Fixed length computation bug introduced in last version

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This commit is contained in:
Celine Mercier
2019-01-22 15:17:59 +01:00
parent a92a7fa070
commit c4321036be
1 changed files with 5 additions and 8 deletions
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11
src/ecopcr.c
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@ -6,7 +6,7 @@
#include <getopt.h>
#define VERSION "1.0.0"
#define VERSION "1.0.1"
/* ----------------------------------------------- */
@ -615,8 +615,7 @@ int main(int argc, char **argv)
if (posj > posi)
length = posj - posi - o1->patlen - o2->patlen;
if (posj < posi)
//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen; // TODO
length = posi - posj - o1->patlen - o2->patlen;
length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;
if ((length>0) && // For when primers touch or overlap
(!lmin || (length >= lmin)) &&
(!lmax || (length <= lmax)))
@ -668,11 +667,9 @@ int main(int argc, char **argv)
length = 0;
if (posj > posi)
//length = posj - posi + 1 - o2->patlen - o1->patlen; /* - o1->patlen : deleted by <EC> (prior to the OBITools3) */ TODO ????
length = posj - posi - o2->patlen - o1->patlen;
length = posj - posi + 1 - o2->patlen - o1->patlen; /* - o1->patlen : deleted by <EC> (prior to the OBITools3) */
if (posj < posi)
//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen; TODO ????
length = posi - posj - o2->patlen - o1->patlen;
length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;
if ((length>0) && // For when primers touch or overlap
(!lmin || (length >= lmin)) &&
(!lmax || (length <= lmax)))