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Manage sequence circularity

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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@166 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
Eric Coissac
2008-04-28 15:49:12 +00:00
parent 4b74056af8
commit d863b7e48e
6 changed files with 134 additions and 51 deletions
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4
src/ecogrep.c
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@ -64,7 +64,7 @@ int ispatternmatching(ecoseq_t *seq, PatternPtr pattern){
if (pattern != NULL)
{
SeqPtr apatseq = NULL;
apatseq=ecoseq2apatseq(seq,apatseq);
apatseq=ecoseq2apatseq(seq,apatseq,0);
return ManberAll(apatseq,pattern,0,0,apatseq->seqlen) > 0;
}
else return 0;
@ -400,4 +400,4 @@ int main(int argc, char **argv){
ECOFREE(restricted_taxid,"Error in free stream");
return 0;
}
}