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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@35 60f365c0-8329-0410-b2a4-ec073aeeaa1d

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This commit is contained in:
Eric Coissac
2007-06-05 13:39:08 +00:00
parent 8b455b0954
commit f2d3a6c5f6
1 changed files with 11 additions and 5 deletions
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16
src/libecoPCR/ecoPCR.h
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@ -56,11 +56,11 @@ typedef struct {
} ecotxformat_t; } ecotxformat_t;
typedef struct { typedef struct ecotxnode {
int32_t taxid; int32_t taxid;
int32_t rank; int32_t rank;
int32_t parent; struct ecotxnode *parent;
char *name; char *name;
} ecotx_t; } ecotx_t;
typedef struct { typedef struct {
@ -191,6 +191,9 @@ ecotxidx_t *read_taxonomyidx(const char *filename);
ecotaxonomy_t *read_taxonomy(const char *prefix); ecotaxonomy_t *read_taxonomy(const char *prefix);
ecotx_t *eco_findtaxonbytaxid(ecotaxonomy_t *taxonomy, int32_t taxid);
int eco_isundertaxon(ecotx_t *taxon, int other_taxid);
ecoseq_t *ecoseq_iterator(const char *prefix); ecoseq_t *ecoseq_iterator(const char *prefix);
@ -227,4 +230,7 @@ ecotx_t *eco_getfamily(ecotx_t *taxon,ecotaxonomy_t *taxonomy);
ecotx_t *eco_getkingdom(ecotx_t *taxon,ecotaxonomy_t *taxonomy); ecotx_t *eco_getkingdom(ecotx_t *taxon,ecotaxonomy_t *taxonomy);
ecotx_t *eco_getsuperkingdom(ecotx_t *taxon,ecotaxonomy_t *taxonomy); ecotx_t *eco_getsuperkingdom(ecotx_t *taxon,ecotaxonomy_t *taxonomy);
int eco_is_taxid_ignored(int *ignored_taxid, int tab_len, int taxid);
int eco_is_taxid_included(ecotaxonomy_t *taxonomy, int *included_taxid, int tab_len, int taxid);
#endif /*ECOPCR_H_*/ #endif /*ECOPCR_H_*/