obitools/ecoprimers
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 2 Wiki Activity

Actualiser src/libecoPCR/ecorank.c

Browse Source
This commit is contained in:
coissac
2025-06-12 13:32:53 +00:00
parent f1ef2caae6
commit 1e3f82bb51
1 changed files with 8 additions and 11 deletions
Download Patch File Download Diff File Expand all files Collapse all files

19
src/libecoPCR/ecorank.c
View File

@ -12,14 +12,14 @@ ecorankidx_t *read_rankidx(const char *filename)
int32_t i; int32_t i;
int32_t rs; int32_t rs;
char *buffer; char *buffer;
f = open_ecorecorddb(filename,&count,1); f = open_ecorecorddb(filename,&count,1);
index = (ecorankidx_t*) ECOMALLOC(sizeof(ecorankidx_t) + sizeof(char*) * (count-1), index = (ecorankidx_t*) ECOMALLOC(sizeof(ecorankidx_t) + sizeof(char*) * (count-1),
"Allocate rank index"); "Allocate rank index");
index->count=count; index->count=count;
for (i=0; i < count; i++) for (i=0; i < count; i++)
{ {
buffer = read_ecorecord(f,&rs); buffer = read_ecorecord(f,&rs);
@ -27,21 +27,18 @@ ecorankidx_t *read_rankidx(const char *filename)
"Allocate rank label"); "Allocate rank label");
strncpy(index->label[i],buffer,rs); strncpy(index->label[i],buffer,rs);
} }
return index; return index;
} }
int32_t rank_index(const char* label,ecorankidx_t* ranks) int32_t rank_index(const char* label,ecorankidx_t* ranks)
{ {
char **rep; char **rep;
fprintf(stderr,"Looking for rank -%s-... ",label);
rep = bsearch(label,ranks->label,ranks->count,sizeof(char*),compareRankLabel); rep = bsearch(label,ranks->label,ranks->count,sizeof(char*),compareRankLabel);
if (rep) if (rep)
return rep-ranks->label; return rep-ranks->label;
else
ECOERROR(ECO_NOTFOUND_ERROR,"Rank label not found");
return -1; return -1;
} }