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Patch minimum tm computation

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Add -A option to list all id present in the DB for helping in -R usage

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@228 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
Eric Coissac
2009-07-18 22:16:18 +00:00
parent 455bf63949
commit 419bda966d
7 changed files with 196 additions and 122 deletions
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3
src/libecoprimer/aproxpattern.c
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@ -97,7 +97,8 @@ pprimercount_t lookforAproxPrimer(pecodnadb_t database, uint32_t seqdbsize,uint3
params.circular = options->circular;
params.maxerr = options->error_max;
params.omask = (1 << options->strict_three_prime) -1;
// params.omask = (1 << options->strict_three_prime) -1;
params.omask = 0;
params.patlen = options->primer_length;
positions.val=NULL;