obitools/ecoprimers
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 2 Wiki Activity

Accept to deal with sequence in lower case

Browse Source 
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@214 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
Eric Coissac
2009-05-13 07:33:39 +00:00
parent b7c1640042
commit b0521a7e15
1 changed files with 5 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
src/libecoPCR/ecoseq.c
View File

@ -100,6 +100,8 @@ ecoseq_t *readnext_ecoseq(FILE *f)
int32_t comp_status; int32_t comp_status;
unsigned long int seqlength; unsigned long int seqlength;
int32_t rs; int32_t rs;
char *c;
int32_t i;
raw = read_ecorecord(f,&rs); raw = read_ecorecord(f,&rs);
@ -144,6 +146,9 @@ ecoseq_t *readnext_ecoseq(FILE *f)
if (comp_status != Z_OK) if (comp_status != Z_OK)
ECOERROR(ECO_IO_ERROR,"I cannot uncompress sequence data"); ECOERROR(ECO_IO_ERROR,"I cannot uncompress sequence data");
for (c=seq->SQ,i=0;i<seqlength;c++,i++)
*c=toupper(*c);
// fprintf(stderr,"seq name : %30s seq size : %d\n",seq->DE,seq->SQ_length); // fprintf(stderr,"seq name : %30s seq size : %d\n",seq->DE,seq->SQ_length);
return seq; return seq;
} }