New version 0.3 with filtering on short words

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@213 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2009-05-13 06:51:25 +00:00
parent 5dc55c7f53
commit b7c1640042
12 changed files with 330 additions and 34 deletions
--- a/src/libecoprimer/hashencoder.h
+++ b/src/libecoprimer/hashencoder.h
@ -0,0 +1,21 @@
+/*
+ * hashencoder.h
+ *
+ *  Created on: 12 mai 2009
+ *      Author: coissac
+ */
+
+#ifndef HASHENCODER_H_
+#define HASHENCODER_H_
+
+static int8_t encoder[] = {0,                                            // A
+		                   -1,                                           // b
+		                   1,                                            // C
+	       	               -1,-1,-1,                                     // d, e, f
+		                   2,                                            // G
+		                   -1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,          // h,i,j,k,l,m,n,o,p,q,r,s
+		                   3,3,                                           // T,U
+		                   -1,-1,-1,-1,-1};                              // v,w,x,y,z
+
+
+#endif /* HASHENCODER_H_ */