obitools/ecoprimers
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New version 0.3 with filtering on short words

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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@213 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
Eric Coissac
2009-05-13 06:51:25 +00:00
parent 5dc55c7f53
commit b7c1640042
12 changed files with 330 additions and 34 deletions
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3
src/libecoprimer/taxstats.c
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@ -47,7 +47,6 @@ int32_t counttaxon(int32_t taxid)
tsearch((void*)((size_t)taxid),&taxontree,cmptaxon);
taxoncount++;
}
return taxoncount;
}
@ -60,6 +59,7 @@ int32_t getrankdbstats(pecodnadb_t seqdb, uint32_t seqdbsize, ecotaxonomy_t *tax
ecotx_t *tmptaxon;
counttaxon(-1);
options->intaxa = 0;
for (i=0;i<seqdbsize;i++)
{
@ -85,6 +85,7 @@ int32_t getrankdbstats(pecodnadb_t seqdb, uint32_t seqdbsize, ecotaxonomy_t *tax
}
counttaxon(-1);
options->outtaxa = 0;
for (i=0;i<seqdbsize;i++)
{