Second run of patch

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@204 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2009-04-23 11:38:52 +00:00
parent 313dd59f5a
commit c36bc5e838
4 changed files with 120 additions and 32 deletions
--- a/src/libecoprimer/apat_search.c
+++ b/src/libecoprimer/apat_search.c
@ -103,8 +103,7 @@ int32_t ManberSub(pecoseq_t pseq,ppattern_t pat,
        for (e = 0, pr = r + 3 ; e <= param->maxerr ; e++, pr += 2)
                *pr = cmask;

-        cmask = ~ param->omask;  // A VOIR !!!!! omask (new) doit <20>tre compos<6F> de + et - ... Ancien omask : bits
-
+        cmask = ~ param->omask;
                                        /* init. scan           */
        data   = (uint8_t*)(pseq->SQ);