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1f5a30b0df
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My complete changes on my laptop, with specificity bug fix + ahocorasick + sets
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@393 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2012-01-03 21:05:31 +00:00 |
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ca1e9d8899
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fixed specificity and pairing bugs
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@287 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2010-11-29 22:57:56 +00:00 |
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396d6e2028
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Patch average size of amplicon computation
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@274 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2010-08-30 12:13:54 +00:00 |
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088b5c09d0
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fixed a small problem of operator precedence in "if (w1 ^ w1a != 0) continue;" by adding parentheses.
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@233 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2009-07-31 09:52:04 +00:00 |
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f1f8562918
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corrected mask bits for base pairs
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@232 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2009-07-30 22:30:04 +00:00 |
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1911880bb9
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Added Code to make sure that if -3 option is given then 3' end must match upto given number of base pairs
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@231 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2009-07-30 22:20:07 +00:00 |
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e79738e170
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commit -m "Cleaned code for thermodynamics properties and added Melting Temperature for approximate version of strict repeats. Also cleaned printing code.
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@223 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2009-07-13 09:26:19 +00:00 |
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3a617890ca
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New option for reference sequence
and bug correction for insequence count
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@218 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2009-06-23 14:11:39 +00:00 |
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e3d922e103
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Merge of eric-test branche to the trunk
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@200 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2009-04-20 08:38:41 +00:00 |
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64838c1cdf
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New version based on sort them merge algorithm
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@180 60f365c0-8329-0410-b2a4-ec073aeeaa1d
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2009-03-04 22:32:55 +00:00 |
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