Eric Coissac
f9410e5aee
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@175 60f365c0-8329-0410-b2a4-ec073aeeaa1d
72 lines
3.5 KiB
C
72 lines
3.5 KiB
C
/* ----------------------------------------------- */
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/* dna_code.h */
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/* alphabet encoding for dna/rna */
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/* ----------------------------------------- */
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/* IUPAC encoding */
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/* ----------------------------------------- */
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/* G/A/T/C */
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/* U=T */
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/* R=AG */
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/* Y=CT */
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/* M=AC */
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/* K=GT */
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/* S=CG */
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/* W=AT */
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/* H=ACT */
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/* B=CGT */
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/* V=ACG */
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/* D=AGT */
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/* N=ACGT */
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/* X=ACGT */
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/* EFIJLOPQZ not recognized */
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/* ----------------------------------------- */
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/* dual encoding */
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/* ----------------------------------------- */
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/* A=ADHMNRVW */
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/* B=BCDGHKMNRSTUVWY */
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/* C=BCHMNSVY */
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/* D=ABDGHKMNRSTUVWY */
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/* G=BDGKNRSV */
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/* H=ABCDHKMNRSTUVWY */
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/* K=BDGHKNRSTUVWY */
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/* M=ABCDHMNRSVWY */
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/* N=ABCDGHKMNRSTUVWY */
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/* R=ABDGHKMNRSVW */
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/* S=BCDGHKMNRSVY */
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/* T=BDHKNTUWY */
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/* U=BDHKNTUWY */
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/* V=ABCDGHKMNRSVWY */
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/* W=ABDHKMNRTUVWY */
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/* X=ABCDGHKMNRSTUVWY */
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/* Y=BCDHKMNSTUVWY */
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/* EFIJLOPQZ not recognized */
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/* ----------------------------------------------- */
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#ifndef USE_DUAL
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/* IUPAC */
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0x00000001 /* A */, 0x00080044 /* B */, 0x00000004 /* C */,
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0x00080041 /* D */, 0x00000000 /* E */, 0x00000000 /* F */,
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0x00000040 /* G */, 0x00080005 /* H */, 0x00000000 /* I */,
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0x00000000 /* J */, 0x00080040 /* K */, 0x00000000 /* L */,
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0x00000005 /* M */, 0x00080045 /* N */, 0x00000000 /* O */,
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0x00000000 /* P */, 0x00000000 /* Q */, 0x00000041 /* R */,
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0x00000044 /* S */, 0x00080000 /* T */, 0x00080000 /* U */,
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0x00000045 /* V */, 0x00080001 /* W */, 0x00080045 /* X */,
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0x00080004 /* Y */, 0x00000000 /* Z */
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#else
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/* DUAL */
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0x00623089 /* A */, 0x017e34ce /* B */, 0x01243086 /* C */,
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0x017e34cb /* D */, 0x00000000 /* E */, 0x00000000 /* F */,
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0x0026244a /* G */, 0x017e348f /* H */, 0x00000000 /* I */,
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0x00000000 /* J */, 0x017e24ca /* K */, 0x00000000 /* L */,
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0x0166308f /* M */, 0x017e34cf /* N */, 0x00000000 /* O */,
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0x00000000 /* P */, 0x00000000 /* Q */, 0x006634cb /* R */,
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0x012634ce /* S */, 0x0158248a /* T */, 0x0158248a /* U */,
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0x016634cf /* V */, 0x017a348b /* W */, 0x017e34cf /* X */,
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0x017c348e /* Y */, 0x00000000 /* Z */
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#endif
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