This commit is contained in:
Aurelie Bonin
2013-12-04 15:37:00 +00:00
parent 015573cf45
commit e08c9d4996
6 changed files with 78 additions and 0 deletions

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family
An integer value corresponding to the family of the taxid stored into the
:doc:`taxid <taxid>` attribute. If the family is not defined for this taxid,
this value is *None*.
.. warning:: This taxonomic information is just added to the sequence for the end-user
convenience and not used by other ``obitool`` programs as taxonomic information.
Only the taxonomic information included in the :doc:`taxid <../attributes/taxid>`
attribute is used as taxonomic annotation.
Attribute added by the programs:
- :doc:`obiuniq <scripts/obiuniq>`
- :doc:`obisample <../scripts/obisample>`

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family_name
A string value indicating the family name of the taxid stored into the
:doc:`taxid <attributes/taxid>`. If the family is not defined for this taxid,
this value is *None*.
.. warning:: This taxonomic information is just added to the sequence for the end-user
convenience and not used by other ``obitool`` programs as taxonomic information.
Only the taxonomic information included in the :doc:`taxid <../attributes/taxid>`
attribute is used as taxonomic annotation.
Attribute added by the programs:
- :doc:`obiuniq <scripts/obiuniq>`
- :doc:`obisample <../scripts/obisample>`

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genus
An integer value corresponding to the genus of the taxid stored into the
:doc:`taxid <taxid>` attribute. If the genus is not defined for this taxid,
this value is *None*.
.. warning:: This taxonomic information is just added to the sequence for the end-user
convenience and not used by other ``obitool`` programs as taxonomic information.
Only the taxonomic information included in the :doc:`taxid <../attributes/taxid>`
attribute is used as taxonomic annotation.
Attribute added by the programs:
- :doc:`obiuniq <scripts/obiuniq>`
- :doc:`obisample <../scripts/obisample>`

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genus_name
A string value indicating the genus name of the taxid stored into the
:doc:`taxid <attributes/taxid>`. If the genus is not defined for this taxid,
this value is *None*.
.. warning:: This taxonomic information is just added to the sequence for the end-user
convenience and not used by other ``obitool`` programs as taxonomic information.
Only the taxonomic information included in the :doc:`taxid <../attributes/taxid>`
attribute is used as taxonomic annotation.
Attribute added by the programs:
- :doc:`obiuniq <scripts/obiuniq>`
- :doc:`obisample <../scripts/obisample>`

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species
An integer value corresponding to the species of the taxid stored into the
:doc:`taxid <taxid>` attribute. If the species is not defined for this taxid,
this value is *None*.
.. warning:: This taxonomic information is just added to the sequence for the end-user
convenience and not used by other ``obitool`` programs as taxonomic information.
Only the taxonomic information included in the :doc:`taxid <../attributes/taxid>`
attribute is used as taxonomic annotation.
Attribute added by the programs:
- :doc:`obiuniq <scripts/obiuniq>`
- :doc:`obisample <../scripts/obisample>`

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species_name
A string value indicating the species name of the taxid stored into the
:doc:`taxid <attributes/taxid>`. If the species is not defined for this taxid,
this value is *None*.
.. warning:: This taxonomic information is just added to the sequence for the end-user
convenience and not used by other ``obitool`` programs as taxonomic information.
Only the taxonomic information included in the :doc:`taxid <../attributes/taxid>`
attribute is used as taxonomic annotation.
Attribute added by the programs:
- :doc:`obiuniq <scripts/obiuniq>`
- :doc:`obisample <../scripts/obisample>`